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| author | Johannes Ranke <jranke@uni-bremen.de> | 2019-02-26 20:28:15 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2019-02-26 20:33:32 +0100 |
| commit | 396e40d2c45d81a8e74c41a2f632665021e980a1 (patch) | |
| tree | c7ab9b5356361b1939e9b00183a7f31071782f64 /docs/reference/NAFTA_SOP_Attachment.html | |
| parent | 64e636d11311be57978ef394c48c9b43fe219059 (diff) | |
NAFTA SOP Attachment vignette
Also:
- Change rounding in print.nafta
- Add dots argument to nafta()
- Use cores=1 in examples
- Restrict N in IORE model to values > 0
Diffstat (limited to 'docs/reference/NAFTA_SOP_Attachment.html')
| -rw-r--r-- | docs/reference/NAFTA_SOP_Attachment.html | 217 |
1 files changed, 217 insertions, 0 deletions
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href="../articles/mkin.html">Introduction to mkin</a> + </li> + <li> + <a href="../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a> + </li> + <li> + <a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a> + </li> + <li> + <a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a> + </li> + <li> + <a href="../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a> + </li> + <li> + <a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a> + </li> + </ul> +</li> +<li> + <a href="../news/index.html">News</a> +</li> + </ul> + + <ul class="nav navbar-nav navbar-right"> + + </ul> + + </div><!--/.nav-collapse --> + </div><!--/.container --> +</div><!--/.navbar --> + + + </header> + +<div class="row"> + <div class="col-md-9 contents"> + <div class="page-header"> + <h1>Example datasets from Attachment 1 to the NAFTA SOP published 2015</h1> + + <div class="hidden name"><code>NAFTA_SOP_Attachment.Rd</code></div> + </div> + + <div class="ref-description"> + + <p>Data taken from from Attachment 1 of the SOP.</p> + + </div> + + <pre class="usage"><span class='no'>NAFTA_SOP_Attachment</span></pre> + + <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2> + + <p>Additionally, a list (NAFTA_SOP_Attachment) containing 16 datasets suitable + for the evaluation with <code><a href='nafta.html'>nafta</a></code></p> + + <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2> + + <p>NAFTA (2011) Guidance for evaluating and calculating degradation kinetics + in environmental media. NAFTA Technical Working Group on Pesticides + <a href='https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/guidance-evaluating-and-calculating-degradation'>https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/guidance-evaluating-and-calculating-degradation</a> + accessed 2019-02-22</p> +<p>US EPA (2015) Standard Operating Procedure for Using the NAFTA Guidance to + Calculate Representative Half-life Values and Characterizing Pesticide + Degradation + <a href='https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/standard-operating-procedure-using-nafta-guidance'>https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/standard-operating-procedure-using-nafta-guidance</a></p> + + + <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> + <pre class="examples"><div class='input'> <span class='no'>nafta_att_p5a</span> <span class='kw'><-</span> <span class='fu'><a href='nafta.html'>nafta</a></span>(<span class='no'>NAFTA_SOP_Attachment</span><span class='kw'>[[</span><span class='st'>"p5a"</span>]], <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>)</div><div class='output co'>#> <span class='message'>The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></div><div class='output co'>#> <span class='message'>The half-life obtained from the IORE model may be used</span></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='no'>nafta_att_p5a</span>)</div><div class='output co'>#> Sums of squares: +#> SFO IORE DFOP +#> 465.21753 56.27506 32.06401 +#> +#> Critical sum of squares for checking the SFO model: +#> [1] 64.4304 +#> +#> Parameters: +#> $SFO +#> Estimate Pr(>t) Lower Upper +#> parent_0 95.84012168 1.095639e-21 92.120517864 99.55972549 +#> k_parent_sink 0.01024015 1.710227e-12 0.008996874 0.01165524 +#> +#> $IORE +#> Estimate Pr(>t) Lower Upper +#> parent_0 1.007532e+02 2.365797e-26 9.891170e+01 1.025947e+02 +#> k__iore_parent_sink 1.544192e-05 8.733384e-02 3.482391e-06 6.847393e-05 +#> N_parent 2.569877e+00 1.140446e-11 2.215298e+00 2.924456e+00 +#> +#> $DFOP +#> Estimate Pr(>t) Lower Upper +#> parent_0 9.994630e+01 4.330861e-27 NA NA +#> k1 2.674255e-02 3.171390e-05 NA NA +#> k2 2.161318e-12 5.000000e-01 NA NA +#> g 6.465276e-01 2.129114e-05 NA NA +#> +#> +#> DTx values: +#> DT50 DT90 DT50_rep +#> SFO 67.7 2.25e+02 6.77e+01 +#> IORE 58.2 1.07e+03 3.22e+02 +#> DFOP 55.5 5.84e+11 3.21e+11 +#> +#> Representative half-life: +#> [1] 321.5119</div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>nafta_att_p5a</span>)</div><div class='img'><img src='NAFTA_SOP_Attachment-1.png' alt='' width='700' height='433' /></div></pre> + </div> + <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> + <h2>Contents</h2> + <ul class="nav nav-pills nav-stacked"> + + <li><a href="#format">Format</a></li> + + <li><a href="#source">Source</a></li> + + <li><a href="#examples">Examples</a></li> + </ul> + + </div> +</div> + + <footer> + <div class="copyright"> + <p>Developed by Johannes Ranke.</p> +</div> + +<div class="pkgdown"> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> +</div> + </footer> + </div> + + + + </body> +</html> + |