diff options
| author | Johannes Ranke <johannes.ranke@jrwb.de> | 2024-07-29 08:06:08 +0200 |
|---|---|---|
| committer | Johannes Ranke <johannes.ranke@jrwb.de> | 2024-07-29 08:06:08 +0200 |
| commit | bad2f70c18cd9f57c0d382914327613bcfc9298f (patch) | |
| tree | 90cb488bf72c07ce4773c8a644fd9f3d903687c1 /docs/reference/index.html | |
| parent | db43ba615c9084963f743df86512bd92ac88c8af (diff) | |
Move coverage to pkgdown docs
The coverage report is neither successful on Travis nor in the github
workflow set up with the usethis package. Therefore the code coverage
report is generated locally and linked into the pkgdown docs.
Diffstat (limited to 'docs/reference/index.html')
| -rw-r--r-- | docs/reference/index.html | 725 |
1 files changed, 399 insertions, 326 deletions
diff --git a/docs/reference/index.html b/docs/reference/index.html index d4a1b253..63e1e634 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -1,662 +1,735 @@ <!DOCTYPE html> -<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Function reference • mkin</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Function reference"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> -<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> -<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> -<![endif]--></head><body> +<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Package index • mkin</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Package index"></head><body> <a href="#main" class="visually-hidden-focusable">Skip to contents</a> - - <nav class="navbar fixed-top navbar-default navbar-expand-lg bg-light"><div class="container"> - + + <nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="default" aria-label="Site navigation"><div class="container"> + <a class="navbar-brand me-2" href="../index.html">mkin</a> - <small class="nav-text text-default me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="Released version">1.2.6</small> + <small class="nav-text text-default me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="Released version">1.2.9</small> + - <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> <span class="navbar-toggler-icon"></span> </button> <div id="navbar" class="collapse navbar-collapse ms-3"> - <ul class="navbar-nav me-auto"><li class="active nav-item"> - <a class="nav-link" href="../reference/index.html">Reference</a> -</li> + <ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li> <li class="nav-item dropdown"> - 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<a class="dropdown-item" href="../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a> - <a class="dropdown-item" href="../articles/prebuilt/2023_mesotrione_parent.html">Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione</a> - <a class="dropdown-item" href="../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a> - <a class="dropdown-item" href="../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a> - <a class="dropdown-item" href="../articles/web_only/multistart.html">Short demo of the multistart method</a> - <div class="dropdown-divider"></div> - <h6 class="dropdown-header" data-toc-skip>Performance</h6> - <a class="dropdown-item" href="../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a> - <a class="dropdown-item" href="../articles/web_only/benchmarks.html">Benchmark timings for mkin</a> - <a class="dropdown-item" href="../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a> - <div class="dropdown-divider"></div> - <h6 class="dropdown-header" data-toc-skip>Miscellaneous</h6> - <a class="dropdown-item" href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a> - <a class="dropdown-item" href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a> - </div> -</li> -<li class="nav-item"> - <a class="nav-link" href="../news/index.html">News</a> -</li> - </ul><form class="form-inline my-2 my-lg-0" role="search"> - <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> - - <ul class="navbar-nav"><li class="nav-item"> - <a class="external-link nav-link" href="https://github.com/jranke/mkin/" aria-label="github"> - <span class="fab fa fab fa-github fa-lg"></span> - - </a> -</li> + <button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button> + <ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="../articles/mkin.html">Introduction to mkin</a></li> + <li><hr class="dropdown-divider"></li> + <li><h6 class="dropdown-header" data-toc-skip>Example evaluations with (generalised) nonlinear least squares</h6></li> + <li><a class="dropdown-item" href="../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a></li> + <li><a class="dropdown-item" href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a></li> + <li><a class="dropdown-item" href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a></li> + <li><hr class="dropdown-divider"></li> + <li><h6 class="dropdown-header" data-toc-skip>Example evaluations with hierarchical models (nonlinear mixed-effects models)</h6></li> + <li><a class="dropdown-item" href="../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a></li> + <li><a class="dropdown-item" href="../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a></li> + <li><a class="dropdown-item" href="../articles/prebuilt/2023_mesotrione_parent.html">Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione</a></li> + <li><a class="dropdown-item" href="../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a></li> + <li><a class="dropdown-item" href="../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a></li> + <li><a class="dropdown-item" href="../articles/web_only/multistart.html">Short demo of the multistart method</a></li> + <li><hr class="dropdown-divider"></li> + <li><h6 class="dropdown-header" data-toc-skip>Performance</h6></li> + <li><a class="dropdown-item" href="../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a></li> + <li><a class="dropdown-item" href="../articles/web_only/benchmarks.html">Benchmark timings for mkin</a></li> + <li><a class="dropdown-item" href="../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a></li> + <li><hr class="dropdown-divider"></li> + <li><h6 class="dropdown-header" data-toc-skip>Miscellaneous</h6></li> + <li><a class="dropdown-item" href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a></li> + <li><a class="dropdown-item" href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a></li> + </ul></li> +<li class="nav-item"><a class="nav-link" href="../coverage/coverage.html">Test coverage</a></li> +<li class="nav-item"><a class="nav-link" href="../news/index.html">News</a></li> + </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search"> + <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li> +<li class="nav-item"><a class="external-link nav-link" href="https://github.com/jranke/mkin/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li> </ul></div> - + </div> </nav><div class="container template-reference-index"> <div class="row"> <main id="main" class="col-md-9"><div class="page-header"> - <img src="" class="logo" alt=""><h1>Function reference</h1> + + <h1>Package index</h1> </div> <div class="section level2"> <h2 id="main-functions">Main functions<a class="anchor" aria-label="anchor" href="#main-functions"></a></h2> - - <p class="section-desc"></p><p>Essential functionality</p> - - </div><div id="" class="section level2"> - - - + <div class="section-desc"><p>Essential functionality</p></div> + + + </div><div class="section level2"> + + + <dl><dt> - - <code><a href="mkinmod.html">mkinmod()</a></code> <code><a href="mkinmod.html">print(<i><mkinmod></i>)</a></code> <code><a href="mkinmod.html">mkinsub()</a></code> + + <code><a href="mkinmod.html">mkinmod()</a></code> <code><a href="mkinmod.html">print(<i><mkinmod></i>)</a></code> <code><a href="mkinmod.html">mkinsub()</a></code> + </dt> <dd>Function to set up a kinetic model with one or more state variables</dd> </dl><dl><dt> - - <code><a href="mkinfit.html">mkinfit()</a></code> + + <code><a href="mkinfit.html">mkinfit()</a></code> + </dt> <dd>Fit a kinetic model to data with one or more state variables</dd> </dl><dl><dt> - - <code><a href="mmkin.html">mmkin()</a></code> <code><a href="mmkin.html">print(<i><mmkin></i>)</a></code> + + <code><a href="mmkin.html">mmkin()</a></code> <code><a href="mmkin.html">print(<i><mmkin></i>)</a></code> + </dt> - <dd>Fit one or more kinetic models with one or more state variables to one or -more datasets</dd> + <dd>Fit one or more kinetic models with one or more state variables to one or more datasets</dd> </dl><dl><dt> - - <code><a href="mhmkin.html">mhmkin()</a></code> <code><a href="mhmkin.html">`[`(<i><mhmkin></i>)</a></code> <code><a href="mhmkin.html">print(<i><mhmkin></i>)</a></code> + + <code><a href="mhmkin.html">mhmkin()</a></code> <code><a href="mhmkin.html">`[`(<i><mhmkin></i>)</a></code> <code><a href="mhmkin.html">print(<i><mhmkin></i>)</a></code> + </dt> - <dd>Fit nonlinear mixed-effects models built from one or more kinetic -degradation models and one or more error models</dd> + <dd>Fit nonlinear mixed-effects models built from one or more kinetic degradation models and one or more error models</dd> </dl></div><div class="section level2"> <h2 id="generics">Generics<a class="anchor" aria-label="anchor" href="#generics"></a></h2> - - <p class="section-desc"></p><p>Generic functions introduced by the package</p> - - </div><div id="" class="section level2"> - - - + <div class="section-desc"><p>Generic functions introduced by the package</p></div> + + + </div><div class="section level2"> + + + <dl><dt> - - <code><a href="parms.html">parms()</a></code> + + <code><a href="parms.html">parms()</a></code> + </dt> <dd>Extract model parameters</dd> </dl><dl><dt> - - <code><a href="status.html">status()</a></code> <code><a href="status.html">print(<i><status.mmkin></i>)</a></code> <code><a href="status.html">print(<i><status.mhmkin></i>)</a></code> + + <code><a href="status.html">status()</a></code> <code><a href="status.html">print(<i><status.mmkin></i>)</a></code> <code><a href="status.html">print(<i><status.mhmkin></i>)</a></code> + </dt> <dd>Method to get status information for fit array objects</dd> </dl><dl><dt> - - <code><a href="illparms.html">illparms()</a></code> <code><a href="illparms.html">print(<i><illparms.mkinfit></i>)</a></code> <code><a href="illparms.html">print(<i><illparms.mmkin></i>)</a></code> <code><a href="illparms.html">print(<i><illparms.saem.mmkin></i>)</a></code> <code><a href="illparms.html">print(<i><illparms.mhmkin></i>)</a></code> + + <code><a href="illparms.html">illparms()</a></code> <code><a href="illparms.html">print(<i><illparms.mkinfit></i>)</a></code> <code><a href="illparms.html">print(<i><illparms.mmkin></i>)</a></code> <code><a href="illparms.html">print(<i><illparms.saem.mmkin></i>)</a></code> <code><a href="illparms.html">print(<i><illparms.mhmkin></i>)</a></code> + </dt> <dd>Method to get the names of ill-defined parameters</dd> </dl><dl><dt> - - <code><a href="endpoints.html">endpoints()</a></code> + + <code><a href="endpoints.html">endpoints()</a></code> + </dt> - <dd>Function to calculate endpoints for further use from kinetic models fitted -with mkinfit</dd> + <dd>Function to calculate endpoints for further use from kinetic models fitted with mkinfit</dd> </dl><dl><dt> - - <code><a href="aw.html">aw()</a></code> + + <code><a href="aw.html">aw()</a></code> + </dt> <dd>Calculate Akaike weights for model averaging</dd> </dl></div><div class="section level2"> <h2 id="show-results">Show results<a class="anchor" aria-label="anchor" href="#show-results"></a></h2> - - <p class="section-desc"></p><p>Functions working with mkinfit objects</p> - - </div><div id="" class="section level2"> - - - + <div class="section-desc"><p>Functions working with mkinfit objects</p></div> + + + </div><div class="section level2"> + + + <dl><dt> - - <code><a href="plot.mkinfit.html">plot(<i><mkinfit></i>)</a></code> <code><a href="plot.mkinfit.html">plot_sep()</a></code> <code><a href="plot.mkinfit.html">plot_res()</a></code> <code><a href="plot.mkinfit.html">plot_err()</a></code> + + <code><a href="plot.mkinfit.html">plot(<i><mkinfit></i>)</a></code> <code><a href="plot.mkinfit.html">plot_sep()</a></code> <code><a href="plot.mkinfit.html">plot_res()</a></code> <code><a href="plot.mkinfit.html">plot_err()</a></code> + </dt> <dd>Plot the observed data and the fitted model of an mkinfit object</dd> </dl><dl><dt> - - <code><a href="summary.mkinfit.html">summary(<i><mkinfit></i>)</a></code> <code><a href="summary.mkinfit.html">print(<i><summary.mkinfit></i>)</a></code> + + <code><a href="summary.mkinfit.html">summary(<i><mkinfit></i>)</a></code> <code><a href="summary.mkinfit.html">print(<i><summary.mkinfit></i>)</a></code> + </dt> <dd>Summary method for class "mkinfit"</dd> </dl><dl><dt> - - <code><a href="confint.mkinfit.html">confint(<i><mkinfit></i>)</a></code> + + <code><a href="confint.mkinfit.html">confint(<i><mkinfit></i>)</a></code> + </dt> <dd>Confidence intervals for parameters of mkinfit objects</dd> </dl><dl><dt> - - <code><a href="update.mkinfit.html">update(<i><mkinfit></i>)</a></code> + + <code><a href="update.mkinfit.html">update(<i><mkinfit></i>)</a></code> + </dt> <dd>Update an mkinfit model with different arguments</dd> </dl><dl><dt> - - <code><a href="lrtest.mkinfit.html">lrtest(<i><mkinfit></i>)</a></code> <code><a href="lrtest.mkinfit.html">lrtest(<i><mmkin></i>)</a></code> + + <code><a href="lrtest.mkinfit.html">lrtest(<i><mkinfit></i>)</a></code> <code><a href="lrtest.mkinfit.html">lrtest(<i><mmkin></i>)</a></code> + </dt> <dd>Likelihood ratio test for mkinfit models</dd> </dl><dl><dt> - - <code><a href="loftest.html">loftest()</a></code> + + <code><a href="loftest.html">loftest()</a></code> + </dt> <dd>Lack-of-fit test for models fitted to data with replicates</dd> </dl><dl><dt> - - <code><a href="mkinerrmin.html">mkinerrmin()</a></code> + + <code><a href="mkinerrmin.html">mkinerrmin()</a></code> + </dt> <dd>Calculate the minimum error to assume in order to pass the variance test</dd> </dl><dl><dt> - - <code><a href="CAKE_export.html">CAKE_export()</a></code> + + <code><a href="CAKE_export.html">CAKE_export()</a></code> + </dt> <dd>Export a list of datasets format to a CAKE study file</dd> </dl></div><div class="section level2"> <h2 id="work-with-mmkin-objects">Work with mmkin objects<a class="anchor" aria-label="anchor" href="#work-with-mmkin-objects"></a></h2> - - <p class="section-desc"></p><p>Functions working with aggregated results</p> - - </div><div id="" class="section level2"> - - - + <div class="section-desc"><p>Functions working with aggregated results</p></div> + + + </div><div class="section level2"> + + + <dl><dt> - - <code><a href="Extract.mmkin.html">`[`(<i><mmkin></i>)</a></code> + + <code><a href="Extract.mmkin.html">`[`(<i><mmkin></i>)</a></code> + </dt> <dd>Subsetting method for mmkin objects</dd> </dl><dl><dt> - - <code><a href="plot.mmkin.html">plot(<i><mmkin></i>)</a></code> + + <code><a href="plot.mmkin.html">plot(<i><mmkin></i>)</a></code> + </dt> - <dd>Plot model fits (observed and fitted) and the residuals for a row or column -of an mmkin object</dd> + <dd>Plot model fits (observed and fitted) and the residuals for a row or column of an mmkin object</dd> </dl><dl><dt> - - <code><a href="AIC.mmkin.html">AIC(<i><mmkin></i>)</a></code> <code><a href="AIC.mmkin.html">BIC(<i><mmkin></i>)</a></code> + + <code><a href="AIC.mmkin.html">AIC(<i><mmkin></i>)</a></code> <code><a href="AIC.mmkin.html">BIC(<i><mmkin></i>)</a></code> + </dt> <dd>Calculate the AIC for a column of an mmkin object</dd> </dl><dl><dt> - - <code><a href="summary.mmkin.html">summary(<i><mmkin></i>)</a></code> <code><a href="summary.mmkin.html">print(<i><summary.mmkin></i>)</a></code> + + <code><a href="summary.mmkin.html">summary(<i><mmkin></i>)</a></code> <code><a href="summary.mmkin.html">print(<i><summary.mmkin></i>)</a></code> + </dt> <dd>Summary method for class "mmkin"</dd> </dl></div><div class="section level2"> <h2 id="mixed-models">Mixed models<a class="anchor" aria-label="anchor" href="#mixed-models"></a></h2> - - <p class="section-desc"></p><p>Create and work with nonlinear hierarchical models</p> - - </div><div id="" class="section level2"> - - - + <div class="section-desc"><p>Create and work with nonlinear hierarchical models</p></div> + + + </div><div class="section level2"> + + + <dl><dt> - - <code><a href="hierarchical_kinetics.html">hierarchical_kinetics()</a></code> + + <code><a href="hierarchical_kinetics.html">hierarchical_kinetics()</a></code> + </dt> <dd>Hierarchical kinetics template</dd> </dl><dl><dt> - - <code><a href="read_spreadsheet.html">read_spreadsheet()</a></code> + + <code><a href="read_spreadsheet.html">read_spreadsheet()</a></code> + </dt> <dd>Read datasets and relevant meta information from a spreadsheet file</dd> </dl><dl><dt> - - <code><a href="nlme.mmkin.html">nlme(<i><mmkin></i>)</a></code> <code><a href="nlme.mmkin.html">print(<i><nlme.mmkin></i>)</a></code> <code><a href="nlme.mmkin.html">update(<i><nlme.mmkin></i>)</a></code> + + <code><a href="nlme.mmkin.html">nlme(<i><mmkin></i>)</a></code> <code><a href="nlme.mmkin.html">print(<i><nlme.mmkin></i>)</a></code> <code><a href="nlme.mmkin.html">update(<i><nlme.mmkin></i>)</a></code> + </dt> <dd>Create an nlme model for an mmkin row object</dd> </dl><dl><dt> - - <code><a href="saem.html">saem()</a></code> <code><a href="saem.html">print(<i><saem.mmkin></i>)</a></code> <code><a href="saem.html">saemix_model()</a></code> <code><a href="saem.html">saemix_data()</a></code> + + <code><a href="saem.html">saem()</a></code> <code><a href="saem.html">print(<i><saem.mmkin></i>)</a></code> <code><a href="saem.html">saemix_model()</a></code> <code><a href="saem.html">saemix_data()</a></code> + </dt> <dd>Fit nonlinear mixed models with SAEM</dd> </dl><dl><dt> - - <code><a href="mhmkin.html">mhmkin()</a></code> <code><a href="mhmkin.html">`[`(<i><mhmkin></i>)</a></code> <code><a href="mhmkin.html">print(<i><mhmkin></i>)</a></code> + + <code><a href="mhmkin.html">mhmkin()</a></code> <code><a href="mhmkin.html">`[`(<i><mhmkin></i>)</a></code> <code><a href="mhmkin.html">print(<i><mhmkin></i>)</a></code> + </dt> - <dd>Fit nonlinear mixed-effects models built from one or more kinetic -degradation models and one or more error models</dd> + <dd>Fit nonlinear mixed-effects models built from one or more kinetic degradation models and one or more error models</dd> </dl><dl><dt> - - <code><a href="plot.mixed.mmkin.html">plot(<i><mixed.mmkin></i>)</a></code> + + <code><a href="plot.mixed.mmkin.html">plot(<i><mixed.mmkin></i>)</a></code> + </dt> <dd>Plot predictions from a fitted nonlinear mixed model obtained via an mmkin row object</dd> </dl><dl><dt> - - <code><a href="summary.nlme.mmkin.html">summary(<i><nlme.mmkin></i>)</a></code> <code><a href="summary.nlme.mmkin.html">print(<i><summary.nlme.mmkin></i>)</a></code> + + <code><a href="summary.nlme.mmkin.html">summary(<i><nlme.mmkin></i>)</a></code> <code><a href="summary.nlme.mmkin.html">print(<i><summary.nlme.mmkin></i>)</a></code> + </dt> <dd>Summary method for class "nlme.mmkin"</dd> </dl><dl><dt> - - <code><a href="summary.saem.mmkin.html">summary(<i><saem.mmkin></i>)</a></code> <code><a href="summary.saem.mmkin.html">print(<i><summary.saem.mmkin></i>)</a></code> + + <code><a href="summary.saem.mmkin.html">summary(<i><saem.mmkin></i>)</a></code> <code><a href="summary.saem.mmkin.html">print(<i><summary.saem.mmkin></i>)</a></code> + </dt> <dd>Summary method for class "saem.mmkin"</dd> </dl><dl><dt> - - <code><a href="anova.saem.mmkin.html">anova(<i><saem.mmkin></i>)</a></code> + + <code><a href="anova.saem.mmkin.html">anova(<i><saem.mmkin></i>)</a></code> + </dt> <dd>Anova method for saem.mmkin objects</dd> </dl><dl><dt> - - <code><a href="logLik.saem.mmkin.html">logLik(<i><saem.mmkin></i>)</a></code> + + <code><a href="logLik.saem.mmkin.html">logLik(<i><saem.mmkin></i>)</a></code> + </dt> <dd>logLik method for saem.mmkin objects</dd> </dl><dl><dt> - - <code><a href="nlme.html">nlme_function()</a></code> <code><a href="nlme.html">nlme_data()</a></code> + + <code><a href="nlme.html">nlme_function()</a></code> <code><a href="nlme.html">nlme_data()</a></code> + </dt> <dd>Helper functions to create nlme models from mmkin row objects</dd> </dl><dl><dt> - - <code><a href="get_deg_func.html">get_deg_func()</a></code> + + <code><a href="get_deg_func.html">get_deg_func()</a></code> + </dt> <dd>Retrieve a degradation function from the mmkin namespace</dd> </dl><dl><dt> - - <code><a href="mixed.html">mixed()</a></code> <code><a href="mixed.html">print(<i><mixed.mmkin></i>)</a></code> + + <code><a href="mixed.html">mixed()</a></code> <code><a href="mixed.html">print(<i><mixed.mmkin></i>)</a></code> + </dt> <dd>Create a mixed effects model from an mmkin row object</dd> </dl><dl><dt> - - <code><a href="reexports.html">reexports</a></code> <code><a href="reexports.html">intervals</a></code> <code><a href="reexports.html">lrtest</a></code> <code><a href="reexports.html">nlme</a></code> + + <code><a href="reexports.html">reexports</a></code> <code><a href="reexports.html">intervals</a></code> <code><a href="reexports.html">lrtest</a></code> <code><a href="reexports.html">nlme</a></code> + </dt> <dd>Objects exported from other packages</dd> </dl><dl><dt> - - <code><a href="intervals.saem.mmkin.html">intervals(<i><saem.mmkin></i>)</a></code> + + <code><a href="intervals.saem.mmkin.html">intervals(<i><saem.mmkin></i>)</a></code> + </dt> <dd>Confidence intervals for parameters in saem.mmkin objects</dd> </dl><dl><dt> - - <code><a href="multistart.html">multistart()</a></code> <code><a href="multistart.html">print(<i><multistart></i>)</a></code> <code><a href="multistart.html">best()</a></code> <code><a href="multistart.html">which.best()</a></code> + + <code><a href="multistart.html">multistart()</a></code> <code><a href="multistart.html">print(<i><multistart></i>)</a></code> <code><a href="multistart.html">best()</a></code> <code><a href="multistart.html">which.best()</a></code> + </dt> <dd>Perform a hierarchical model fit with multiple starting values</dd> </dl><dl><dt> - - <code><a href="llhist.html">llhist()</a></code> + + <code><a href="llhist.html">llhist()</a></code> + </dt> <dd>Plot the distribution of log likelihoods from multistart objects</dd> </dl><dl><dt> - - <code><a href="parplot.html">parplot()</a></code> + + <code><a href="parplot.html">parplot()</a></code> + </dt> <dd>Plot parameter variability of multistart objects</dd> + </dl><dl><dt> + + <code><a href="check_failed.html">check_failed()</a></code> + + </dt> + <dd>Check if fit within an mhmkin object failed</dd> </dl></div><div class="section level2"> <h2 id="datasets-and-known-results">Datasets and known results<a class="anchor" aria-label="anchor" href="#datasets-and-known-results"></a></h2> - - - - </div><div id="" class="section level2"> - - - + + + + </div><div class="section level2"> + + + <dl><dt> - - <code><a href="ds_mixed.html">ds_mixed</a></code> <code><a href="ds_mixed.html">ds_sfo</a></code> <code><a href="ds_mixed.html">ds_fomc</a></code> <code><a href="ds_mixed.html">ds_dfop</a></code> <code><a href="ds_mixed.html">ds_hs</a></code> <code><a href="ds_mixed.html">ds_dfop_sfo</a></code> + + <code><a href="ds_mixed.html">ds_mixed</a></code> <code><a href="ds_mixed.html">ds_sfo</a></code> <code><a href="ds_mixed.html">ds_fomc</a></code> <code><a href="ds_mixed.html">ds_dfop</a></code> <code><a href="ds_mixed.html">ds_hs</a></code> <code><a href="ds_mixed.html">ds_dfop_sfo</a></code> + </dt> <dd>Synthetic data for hierarchical kinetic degradation models</dd> </dl><dl><dt> - - <code><a href="D24_2014.html">D24_2014</a></code> + + <code><a href="D24_2014.html">D24_2014</a></code> + </dt> <dd>Aerobic soil degradation data on 2,4-D from the EU assessment in 2014</dd> </dl><dl><dt> - - <code><a href="dimethenamid_2018.html">dimethenamid_2018</a></code> + + <code><a href="dimethenamid_2018.html">dimethenamid_2018</a></code> + </dt> <dd>Aerobic soil degradation data on dimethenamid and dimethenamid-P from the EU assessment in 2018</dd> </dl><dl><dt> - - <code><a href="FOCUS_2006_datasets.html">FOCUS_2006_A</a></code> <code><a href="FOCUS_2006_datasets.html">FOCUS_2006_B</a></code> <code><a href="FOCUS_2006_datasets.html">FOCUS_2006_C</a></code> <code><a href="FOCUS_2006_datasets.html">FOCUS_2006_D</a></code> <code><a href="FOCUS_2006_datasets.html">FOCUS_2006_E</a></code> <code><a href="FOCUS_2006_datasets.html">FOCUS_2006_F</a></code> + + <code><a href="FOCUS_2006_datasets.html">FOCUS_2006_A</a></code> <code><a href="FOCUS_2006_datasets.html">FOCUS_2006_B</a></code> <code><a href="FOCUS_2006_datasets.html">FOCUS_2006_C</a></code> <code><a href="FOCUS_2006_datasets.html">FOCUS_2006_D</a></code> <code><a href="FOCUS_2006_datasets.html">FOCUS_2006_E</a></code> <code><a href="FOCUS_2006_datasets.html">FOCUS_2006_F</a></code> + </dt> <dd>Datasets A to F from the FOCUS Kinetics report from 2006</dd> </dl><dl><dt> - - <code><a href="FOCUS_2006_SFO_ref_A_to_F.html">FOCUS_2006_SFO_ref_A_to_F</a></code> + + <code><a href="FOCUS_2006_SFO_ref_A_to_F.html">FOCUS_2006_SFO_ref_A_to_F</a></code> + </dt> <dd>Results of fitting the SFO model to Datasets A to F of FOCUS (2006)</dd> </dl><dl><dt> - - <code><a href="FOCUS_2006_FOMC_ref_A_to_F.html">FOCUS_2006_FOMC_ref_A_to_F</a></code> + + <code><a href="FOCUS_2006_FOMC_ref_A_to_F.html">FOCUS_2006_FOMC_ref_A_to_F</a></code> + </dt> <dd>Results of fitting the FOMC model to Datasets A to F of FOCUS (2006)</dd> </dl><dl><dt> - - <code><a href="FOCUS_2006_HS_ref_A_to_F.html">FOCUS_2006_HS_ref_A_to_F</a></code> + + <code><a href="FOCUS_2006_HS_ref_A_to_F.html">FOCUS_2006_HS_ref_A_to_F</a></code> + </dt> <dd>Results of fitting the HS model to Datasets A to F of FOCUS (2006)</dd> </dl><dl><dt> - - <code><a href="FOCUS_2006_DFOP_ref_A_to_B.html">FOCUS_2006_DFOP_ref_A_to_B</a></code> + + <code><a href="FOCUS_2006_DFOP_ref_A_to_B.html">FOCUS_2006_DFOP_ref_A_to_B</a></code> + </dt> <dd>Results of fitting the DFOP model to Datasets A to B of FOCUS (2006)</dd> </dl><dl><dt> - - <code><a href="NAFTA_SOP_2015.html">NAFTA_SOP_Appendix_B</a></code> <code><a href="NAFTA_SOP_2015.html">NAFTA_SOP_Appendix_D</a></code> + + <code><a href="NAFTA_SOP_2015.html">NAFTA_SOP_Appendix_B</a></code> <code><a href="NAFTA_SOP_2015.html">NAFTA_SOP_Appendix_D</a></code> + </dt> <dd>Example datasets from the NAFTA SOP published 2015</dd> </dl><dl><dt> - - <code><a href="NAFTA_SOP_Attachment.html">NAFTA_SOP_Attachment</a></code> + + <code><a href="NAFTA_SOP_Attachment.html">NAFTA_SOP_Attachment</a></code> + </dt> <dd>Example datasets from Attachment 1 to the NAFTA SOP published 2015</dd> </dl><dl><dt> - - <code><a href="mccall81_245T.html">mccall81_245T</a></code> + + <code><a href="mccall81_245T.html">mccall81_245T</a></code> + </dt> <dd>Datasets on aerobic soil metabolism of 2,4,5-T in six soils</dd> </dl><dl><dt> - - <code><a href="schaefer07_complex_case.html">schaefer07_complex_case</a></code> + + <code><a href="schaefer07_complex_case.html">schaefer07_complex_case</a></code> + </dt> <dd>Metabolism data set used for checking the software quality of KinGUI</dd> </dl><dl><dt> - - <code><a href="synthetic_data_for_UBA_2014.html">synthetic_data_for_UBA_2014</a></code> + + <code><a href="synthetic_data_for_UBA_2014.html">synthetic_data_for_UBA_2014</a></code> + </dt> <dd>Synthetic datasets for one parent compound with two metabolites</dd> </dl><dl><dt> - - <code><a href="experimental_data_for_UBA.html">experimental_data_for_UBA_2019</a></code> + + <code><a href="experimental_data_for_UBA.html">experimental_data_for_UBA_2019</a></code> + </dt> <dd>Experimental datasets used for development and testing of error models</dd> </dl><dl><dt> - - <code><a href="test_data_from_UBA_2014.html">test_data_from_UBA_2014</a></code> + + <code><a href="test_data_from_UBA_2014.html">test_data_from_UBA_2014</a></code> + </dt> <dd>Three experimental datasets from two water sediment systems and one soil</dd> </dl><dl><dt> - - <code><a href="focus_soil_moisture.html">focus_soil_moisture</a></code> + + <code><a href="focus_soil_moisture.html">focus_soil_moisture</a></code> + </dt> <dd>FOCUS default values for soil moisture contents at field capacity, MWHC and 1/3 bar</dd> </dl><dl><dt> - - <code><a href="mkinds.html">print(<i><mkinds></i>)</a></code> + + <code><a href="mkinds.html">print(<i><mkinds></i>)</a></code> + </dt> <dd>A dataset class for mkin</dd> </dl><dl><dt> - - <code><a href="mkindsg.html">print(<i><mkindsg></i>)</a></code> + + <code><a href="mkindsg.html">print(<i><mkindsg></i>)</a></code> + </dt> <dd>A class for dataset groups for mkin</dd> </dl></div><div class="section level2"> <h2 id="nafta-guidance">NAFTA guidance<a class="anchor" aria-label="anchor" href="#nafta-guidance"></a></h2> - - - - </div><div id="" class="section level2"> - - - + + + + </div><div class="section level2"> + + + <dl><dt> - - <code><a href="nafta.html">nafta()</a></code> <code><a href="nafta.html">print(<i><nafta></i>)</a></code> + + <code><a href="nafta.html">nafta()</a></code> <code><a href="nafta.html">print(<i><nafta></i>)</a></code> + </dt> <dd>Evaluate parent kinetics using the NAFTA guidance</dd> </dl><dl><dt> - - <code><a href="plot.nafta.html">plot(<i><nafta></i>)</a></code> + + <code><a href="plot.nafta.html">plot(<i><nafta></i>)</a></code> + </dt> <dd>Plot the results of the three models used in the NAFTA scheme.</dd> </dl></div><div class="section level2"> <h2 id="utility-functions">Utility functions<a class="anchor" aria-label="anchor" href="#utility-functions"></a></h2> - - - - </div><div id="" class="section level2"> - - - + + + + </div><div class="section level2"> + + + <dl><dt> - - <code><a href="summary_listing.html">summary_listing()</a></code> <code><a href="summary_listing.html">tex_listing()</a></code> <code><a href="summary_listing.html">html_listing()</a></code> + + <code><a href="summary_listing.html">summary_listing()</a></code> <code><a href="summary_listing.html">tex_listing()</a></code> <code><a href="summary_listing.html">html_listing()</a></code> + </dt> <dd>Display the output of a summary function according to the output format</dd> </dl><dl><dt> - - <code><a href="f_time_norm_focus.html">f_time_norm_focus()</a></code> + + <code><a href="f_time_norm_focus.html">f_time_norm_focus()</a></code> + </dt> <dd>Normalisation factors for aerobic soil degradation according to FOCUS guidance</dd> </dl><dl><dt> - - <code><a href="set_nd_nq.html">set_nd_nq()</a></code> <code><a href="set_nd_nq.html">set_nd_nq_focus()</a></code> + + <code><a href="set_nd_nq.html">set_nd_nq()</a></code> <code><a href="set_nd_nq.html">set_nd_nq_focus()</a></code> + </dt> <dd>Set non-detects and unquantified values in residue series without replicates</dd> </dl><dl><dt> - - <code><a href="max_twa_parent.html">max_twa_parent()</a></code> <code><a href="max_twa_parent.html">max_twa_sfo()</a></code> <code><a href="max_twa_parent.html">max_twa_fomc()</a></code> <code><a href="max_twa_parent.html">max_twa_dfop()</a></code> <code><a href="max_twa_parent.html">max_twa_hs()</a></code> + + <code><a href="max_twa_parent.html">max_twa_parent()</a></code> <code><a href="max_twa_parent.html">max_twa_sfo()</a></code> <code><a href="max_twa_parent.html">max_twa_fomc()</a></code> <code><a href="max_twa_parent.html">max_twa_dfop()</a></code> <code><a href="max_twa_parent.html">max_twa_hs()</a></code> + </dt> - <dd>Function to calculate maximum time weighted average concentrations from -kinetic models fitted with mkinfit</dd> + <dd>Function to calculate maximum time weighted average concentrations from kinetic models fitted with mkinfit</dd> </dl><dl><dt> - - <code><a href="mkin_wide_to_long.html">mkin_wide_to_long()</a></code> + + <code><a href="mkin_wide_to_long.html">mkin_wide_to_long()</a></code> + </dt> <dd>Convert a dataframe with observations over time into long format</dd> </dl><dl><dt> - - <code><a href="mkin_long_to_wide.html">mkin_long_to_wide()</a></code> + + <code><a href="mkin_long_to_wide.html">mkin_long_to_wide()</a></code> + </dt> <dd>Convert a dataframe from long to wide format</dd> </dl></div><div class="section level2"> <h2 id="helper-functions-mainly-used-internally">Helper functions mainly used internally<a class="anchor" aria-label="anchor" href="#helper-functions-mainly-used-internally"></a></h2> - - - - </div><div id="" class="section level2"> - - - + + + + </div><div class="section level2"> + + + <dl><dt> - - <code><a href="mkinpredict.html">mkinpredict()</a></code> + + <code><a href="mkinpredict.html">mkinpredict()</a></code> + </dt> <dd>Produce predictions from a kinetic model using specific parameters</dd> </dl><dl><dt> - - <code><a href="transform_odeparms.html">transform_odeparms()</a></code> <code><a href="transform_odeparms.html">backtransform_odeparms()</a></code> + + <code><a href="transform_odeparms.html">transform_odeparms()</a></code> <code><a href="transform_odeparms.html">backtransform_odeparms()</a></code> + </dt> <dd>Functions to transform and backtransform kinetic parameters for fitting</dd> </dl><dl><dt> - - <code><a href="ilr.html">ilr()</a></code> <code><a href="ilr.html">invilr()</a></code> + + <code><a href="ilr.html">ilr()</a></code> <code><a href="ilr.html">invilr()</a></code> + </dt> <dd>Function to perform isometric log-ratio transformation</dd> </dl><dl><dt> - - <code><a href="logLik.mkinfit.html">logLik(<i><mkinfit></i>)</a></code> + + <code><a href="logLik.mkinfit.html">logLik(<i><mkinfit></i>)</a></code> + </dt> <dd>Calculated the log-likelihood of a fitted mkinfit object</dd> </dl><dl><dt> - - <code><a href="residuals.mkinfit.html">residuals(<i><mkinfit></i>)</a></code> + + <code><a href="residuals.mkinfit.html">residuals(<i><mkinfit></i>)</a></code> + </dt> <dd>Extract residuals from an mkinfit model</dd> </dl><dl><dt> - - <code><a href="nobs.mkinfit.html">nobs(<i><mkinfit></i>)</a></code> + + <code><a href="nobs.mkinfit.html">nobs(<i><mkinfit></i>)</a></code> + </dt> <dd>Number of observations on which an mkinfit object was fitted</dd> </dl><dl><dt> - - <code><a href="mkinresplot.html">mkinresplot()</a></code> + + <code><a href="mkinresplot.html">mkinresplot()</a></code> + </dt> <dd>Function to plot residuals stored in an mkin object</dd> </dl><dl><dt> - - <code><a href="mkinparplot.html">mkinparplot()</a></code> + + <code><a href="mkinparplot.html">mkinparplot()</a></code> + </dt> <dd>Function to plot the confidence intervals obtained using mkinfit</dd> </dl><dl><dt> - - <code><a href="mkinerrplot.html">mkinerrplot()</a></code> + + <code><a href="mkinerrplot.html">mkinerrplot()</a></code> + </dt> <dd>Function to plot squared residuals and the error model for an mkin object</dd> </dl><dl><dt> - - <code><a href="mean_degparms.html">mean_degparms()</a></code> + + <code><a href="mean_degparms.html">mean_degparms()</a></code> + </dt> <dd>Calculate mean degradation parameters for an mmkin row object</dd> </dl><dl><dt> - - <code><a href="create_deg_func.html">create_deg_func()</a></code> + + <code><a href="create_deg_func.html">create_deg_func()</a></code> + </dt> <dd>Create degradation functions for known analytical solutions</dd> </dl></div><div class="section level2"> <h2 id="analytical-solutions">Analytical solutions<a class="anchor" aria-label="anchor" href="#analytical-solutions"></a></h2> - - <p class="section-desc"></p><p>Parent only model solutions</p> - - </div><div id="" class="section level2"> - - - + <div class="section-desc"><p>Parent only model solutions</p></div> + + + </div><div class="section level2"> + + + <dl><dt> - - <code><a href="SFO.solution.html">SFO.solution()</a></code> + + <code><a href="SFO.solution.html">SFO.solution()</a></code> + </dt> <dd>Single First-Order kinetics</dd> </dl><dl><dt> - - <code><a href="FOMC.solution.html">FOMC.solution()</a></code> + + <code><a href="FOMC.solution.html">FOMC.solution()</a></code> + </dt> <dd>First-Order Multi-Compartment kinetics</dd> </dl><dl><dt> - - <code><a href="DFOP.solution.html">DFOP.solution()</a></code> + + <code><a href="DFOP.solution.html">DFOP.solution()</a></code> + </dt> <dd>Double First-Order in Parallel kinetics</dd> </dl><dl><dt> - - <code><a href="SFORB.solution.html">SFORB.solution()</a></code> + + <code><a href="SFORB.solution.html">SFORB.solution()</a></code> + </dt> <dd>Single First-Order Reversible Binding kinetics</dd> </dl><dl><dt> - - <code><a href="HS.solution.html">HS.solution()</a></code> + + <code><a href="HS.solution.html">HS.solution()</a></code> + </dt> <dd>Hockey-Stick kinetics</dd> </dl><dl><dt> - - <code><a href="IORE.solution.html">IORE.solution()</a></code> + + <code><a href="IORE.solution.html">IORE.solution()</a></code> + </dt> <dd>Indeterminate order rate equation kinetics</dd> </dl><dl><dt> - - <code><a href="logistic.solution.html">logistic.solution()</a></code> + + <code><a href="logistic.solution.html">logistic.solution()</a></code> + </dt> <dd>Logistic kinetics</dd> </dl></div><div class="section level2"> <h2 id="generate-synthetic-datasets">Generate synthetic datasets<a class="anchor" aria-label="anchor" href="#generate-synthetic-datasets"></a></h2> - - - - </div><div id="" class="section level2"> - - - + + + + </div><div class="section level2"> + + + <dl><dt> - - <code><a href="add_err.html">add_err()</a></code> + + <code><a href="add_err.html">add_err()</a></code> + </dt> <dd>Add normally distributed errors to simulated kinetic degradation data</dd> </dl><dl><dt> - - <code><a href="sigma_twocomp.html">sigma_twocomp()</a></code> + + <code><a href="sigma_twocomp.html">sigma_twocomp()</a></code> + </dt> <dd>Two-component error model</dd> </dl></div><div class="section level2"> <h2 id="deprecated-functions">Deprecated functions<a class="anchor" aria-label="anchor" href="#deprecated-functions"></a></h2> - - <p class="section-desc"></p><p>Functions that have been superseded</p> - - </div><div id="" class="section level2"> - - - + <div class="section-desc"><p>Functions that have been superseded</p></div> + + + </div><div class="section level2"> + + + <dl><dt> - - <code><a href="mkinplot.html">mkinplot()</a></code> + + <code><a href="mkinplot.html">mkinplot()</a></code> + </dt> <dd>Plot the observed data and the fitted model of an mkinfit object</dd> </dl></div> - </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> + </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2> </nav></aside></div> <footer><div class="pkgdown-footer-left"> - 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