Merge branch 'main' into custom_lsoda_call

1 files changed, 22 insertions, 9 deletions

diff --git a/docs/reference/mkin_long_to_wide.html b/docs/reference/mkin_long_to_wide.html
index ba00a80a..1008876d 100644
--- a/docs/reference/mkin_long_to_wide.html
+++ b/docs/reference/mkin_long_to_wide.html
@@ -19,7 +19,7 @@ variable and several dependent variables as columns."><!-- mathjax --><script sr
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.1.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.0</span>
       </span>
     </div>
 
@@ -46,19 +46,25 @@ variable and several dependent variables as columns."><!-- mathjax --><script sr
       <a href="../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
     </li>
     <li>
-      <a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+      <a href="../articles/web_only/multistart.html">Short demo of the multistart method</a>
     </li>
     <li>
       <a href="../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
     </li>
     <li>
+      <a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+    </li>
+    <li>
       <a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
     </li>
     <li>
       <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
     </li>
     <li>
-      <a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
+      <a href="../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
+    </li>
+    <li>
+      <a href="../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
     </li>
   </ul></li>
 <li>
@@ -91,7 +97,7 @@ variable and several dependent variables as columns.</p>
     </div>
 
     <div id="ref-usage">
-    <div class="sourceCode"><pre class="sourceCode r"><code><span class="fu">mkin_long_to_wide</span><span class="op">(</span><span class="va">long_data</span>, time <span class="op">=</span> <span class="st">"time"</span>, outtime <span class="op">=</span> <span class="st">"time"</span><span class="op">)</span></code></pre></div>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">mkin_long_to_wide</span><span class="op">(</span><span class="va">long_data</span>, time <span class="op">=</span> <span class="st">"time"</span>, outtime <span class="op">=</span> <span class="st">"time"</span><span class="op">)</span></span></code></pre></div>
     </div>
 
     <div id="arguments">
@@ -101,14 +107,21 @@ variable and several dependent variables as columns.</p>
 the time values specified by the <code>time</code> argument, one column called
 "name" with the grouping of the observed values, and finally one column of
 observed values called "value".</p></dd>
+
+
 <dt>time</dt>
 <dd><p>The name of the time variable in the long input data.</p></dd>
+
+
 <dt>outtime</dt>
 <dd><p>The name of the time variable in the wide output data.</p></dd>
+
 </dl></div>
     <div id="value">
     <h2>Value</h2>
-    <p>Dataframe in wide format.</p>
+    
+
+<p>Dataframe in wide format.</p>
     </div>
     <div id="author">
     <h2>Author</h2>
@@ -117,8 +130,8 @@ observed values called "value".</p></dd>
 
     <div id="ref-examples">
     <h2>Examples</h2>
-    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"></span>
-<span class="r-in"><span class="fu">mkin_long_to_wide</span><span class="op">(</span><span class="va">FOCUS_2006_D</span><span class="op">)</span></span>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="fu">mkin_long_to_wide</span><span class="op">(</span><span class="va">FOCUS_2006_D</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>    time parent    m1</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> 1     0  99.46  0.00</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> 2     0 102.04  0.00</span>
@@ -142,7 +155,7 @@ observed values called "value".</p></dd>
 <span class="r-out co"><span class="r-pr">#&gt;</span> 20  100     NA 33.13</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> 21  120     NA 25.15</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> 22  120     NA 33.31</span>
-<span class="r-in"></span>
+<span class="r-in"><span></span></span>
 </code></pre></div>
     </div>
   </div>
@@ -157,7 +170,7 @@ observed values called "value".</p></dd>
 </div>
 
 <div class="pkgdown">
-  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.3.</p>
+  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.6.</p>
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