Exclude more example code from CRAN checks

to avoid NOTES about long execution times.

Static documentation rebuilt by pkgdown with run_dont_run = TRUE

1 files changed, 26 insertions, 9 deletions

diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html
index a0eade3b..857e0c74 100644
--- a/docs/reference/mkinmod.html
+++ b/docs/reference/mkinmod.html
@@ -66,7 +66,7 @@ For the definition of model types and their parameters, the equations given
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.3</span>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.4</span>
       </span>
     </div>
 
@@ -221,17 +221,35 @@ For the definition of model types and their parameters, the equations given
 <span class='no'>SFO_SFO</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinmod</span>(
   <span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>),
   <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
-</div><span class='co'># NOT RUN {</span>
-<span class='co'># The above model used to be specified like this, before the advent of mkinsub()</span>
+</div><div class='input'><span class='co'># The above model used to be specified like this, before the advent of mkinsub()</span>
 <span class='no'>SFO_SFO</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinmod</span>(
   <span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>list</span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='st'>"m1"</span>),
-  <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>list</span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>))
-
+  <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>list</span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
 <span class='co'># Show details of creating the C function</span>
 <span class='no'>SFO_SFO</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinmod</span>(
   <span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>),
-  <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>), <span class='kw'>verbose</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
-
+  <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>), <span class='kw'>verbose</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; Compilation argument:
+#&gt;  /usr/lib/R/bin/R CMD SHLIB file3c104e6e45e4.c 2&gt; file3c104e6e45e4.c.err.txt 
+#&gt; Program source:
+#&gt;   1: #include &lt;R.h&gt;
+#&gt;   2: 
+#&gt;   3: 
+#&gt;   4: static double parms [3];
+#&gt;   5: #define k_parent_sink parms[0]
+#&gt;   6: #define k_parent_m1 parms[1]
+#&gt;   7: #define k_m1_sink parms[2]
+#&gt;   8: 
+#&gt;   9: void initpar(void (* odeparms)(int *, double *)) {
+#&gt;  10:     int N = 3;
+#&gt;  11:     odeparms(&amp;N, parms);
+#&gt;  12: }
+#&gt;  13: 
+#&gt;  14: 
+#&gt;  15: void func ( int * n, double * t, double * y, double * f, double * rpar, int * ipar ) {
+#&gt;  16: 
+#&gt;  17: f[0] = - k_parent_sink * y[0] - k_parent_m1 * y[0];
+#&gt;  18: f[1] = + k_parent_m1 * y[0] - k_m1_sink * y[1];
+#&gt;  19: }</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
 <span class='co'># If we have several parallel metabolites </span>
 <span class='co'># (compare tests/testthat/test_synthetic_data_for_UBA_2014.R)</span>
 <span class='no'>m_synth_DFOP_par</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinmod</span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"DFOP"</span>, <span class='fu'>c</span>(<span class='st'>"M1"</span>, <span class='st'>"M2"</span>)),
@@ -241,8 +259,7 @@ For the definition of model types and their parameters, the equations given
 
 <span class='no'>fit_DFOP_par_c</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>m_synth_DFOP_par</span>,
                           <span class='no'>synthetic_data_for_UBA_2014</span><span class='kw'>[[</span><span class='fl'>12</span>]]$<span class='no'>data</span>,
-                          <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
-<span class='co'># }</span></pre>
+                          <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div></pre>
   </div>
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     <h2>Contents</h2>