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| author | Johannes Ranke <jranke@uni-bremen.de> | 2019-04-10 10:17:35 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2019-04-10 10:17:35 +0200 |
| commit | 194659fcaccdd1ee37851725b8c72e99daa3a8cf (patch) | |
| tree | edbbebe8956000b9eb725ca425b91e051571ec02 /docs/reference/mkinpredict.html | |
| parent | 5814be02f286ce96d6cff8d698aea6844e4025f1 (diff) | |
Adapt tests, vignettes and examples
- Write the NEWS
- Static documentation rebuilt by pkgdown
- Adapt mkinerrmin
- Fix (hopefully all) remaining problems in mkinfit
Diffstat (limited to 'docs/reference/mkinpredict.html')
| -rw-r--r-- | docs/reference/mkinpredict.html | 76 |
1 files changed, 37 insertions, 39 deletions
diff --git a/docs/reference/mkinpredict.html b/docs/reference/mkinpredict.html index fb4afa9a..56c1ed27 100644 --- a/docs/reference/mkinpredict.html +++ b/docs/reference/mkinpredict.html @@ -65,7 +65,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">mkin</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.48.1</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.4</span> </span> </div> @@ -333,50 +333,48 @@ <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fl'>0</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>20</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>0.1</span>), <span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"deSolve"</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#> time parent m1 #> 201 20 4.978707 27.46227</div><div class='output co'>#> User System verstrichen -#> 0.002 0.000 0.002 </div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>( +#> 0.002 0.000 0.001 </div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>( <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='fu'>mkinpredict</span>(<span class='no'>SFO_SFO</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>k_parent_m1</span> <span class='kw'>=</span> <span class='fl'>0.05</span>, <span class='kw'>k_parent_sink</span> <span class='kw'>=</span> <span class='fl'>0.1</span>, <span class='kw'>k_m1_sink</span> <span class='kw'>=</span> <span class='fl'>0.01</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fl'>0</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>20</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>0.1</span>), <span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"deSolve"</span>, <span class='kw'>use_compiled</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#> time parent m1 #> 201 20 4.978707 27.46227</div><div class='output co'>#> User System verstrichen -#> 0.039 0.000 0.039 </div><div class='input'> +#> 0.04 0.00 0.04 </div><div class='input'> </div><div class='input'> <span class='co'># Predict from a fitted model</span> - <span class='no'>f</span> <span class='kw'><-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_C</span>)</div><div class='output co'>#> Model cost at call 1 : 552.5739 -#> Model cost at call 3 : 552.5739 -#> Model cost at call 4 : 552.5739 -#> Model cost at call 6 : 279.9345 -#> Model cost at call 7 : 279.9344 -#> Model cost at call 8 : 279.9294 -#> Model cost at call 9 : 279.9294 -#> Model cost at call 12 : 200.3629 -#> Model cost at call 13 : 200.3629 -#> Model cost at call 18 : 197.9039 -#> Model cost at call 23 : 197.9039 -#> Model cost at call 25 : 196.6754 -#> Model cost at call 27 : 196.6754 -#> Model cost at call 32 : 196.5742 -#> Model cost at call 33 : 196.5742 -#> Model cost at call 34 : 196.5742 -#> Model cost at call 38 : 196.5361 -#> Model cost at call 40 : 196.5361 -#> Model cost at call 44 : 196.5336 -#> Model cost at call 45 : 196.5336 -#> Model cost at call 50 : 196.5334 -#> Model cost at call 51 : 196.5334 -#> Model cost at call 52 : 196.5334 -#> Model cost at call 56 : 196.5334 -#> Model cost at call 58 : 196.5334 -#> Model cost at call 59 : 196.5334 -#> Model cost at call 65 : 196.5334 -#> Model cost at call 73 : 196.5334 -#> Model cost at call 78 : 196.5334 -#> Model cost at call 80 : 196.5334 -#> Optimisation by method Port successfully terminated.</div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/utils/topics/head'>head</a></span>(<span class='fu'>mkinpredict</span>(<span class='no'>f</span>))</div><div class='output co'>#> time parent m1 + <span class='no'>f</span> <span class='kw'><-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_C</span>)</div><div class='output co'>#> Negative log-likelihood at call 1: 552.5739 +#> Negative log-likelihood at call 3: 552.5739 +#> Negative log-likelihood at call 4: 552.5739 +#> Negative log-likelihood at call 6: 279.9345 +#> Negative log-likelihood at call 7: 279.9344 +#> Negative log-likelihood at call 8: 279.9294 +#> Negative log-likelihood at call 9: 279.9294 +#> Negative log-likelihood at call 12: 200.3629 +#> Negative log-likelihood at call 13: 200.3629 +#> Negative log-likelihood at call 18: 197.9039 +#> Negative log-likelihood at call 25: 196.6754 +#> Negative log-likelihood at call 27: 196.6754 +#> Negative log-likelihood at call 32: 196.5742 +#> Negative log-likelihood at call 33: 196.5742 +#> Negative log-likelihood at call 34: 196.5742 +#> Negative log-likelihood at call 38: 196.5361 +#> Negative log-likelihood at call 40: 196.5361 +#> Negative log-likelihood at call 44: 196.5336 +#> Negative log-likelihood at call 45: 196.5336 +#> Negative log-likelihood at call 50: 196.5334 +#> Negative log-likelihood at call 51: 196.5334 +#> Negative log-likelihood at call 52: 196.5334 +#> Negative log-likelihood at call 56: 196.5334 +#> Negative log-likelihood at call 58: 196.5334 +#> Negative log-likelihood at call 59: 196.5334 +#> Negative log-likelihood at call 65: 196.5334 +#> Negative log-likelihood at call 75: 26.64668 +#> Negative log-likelihood at call 103: 26.64668 +#> Optimisation successfully terminated.</div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/utils/topics/head'>head</a></span>(<span class='fu'>mkinpredict</span>(<span class='no'>f</span>))</div><div class='output co'>#> time parent m1 #> 1 0.0 82.49216 0.000000 -#> 2 0.1 80.00563 1.179955 -#> 3 0.2 77.59404 2.312580 -#> 4 0.3 75.25515 3.399419 -#> 5 0.4 72.98675 4.441969 -#> 6 0.5 70.78673 5.441679</div><div class='input'> </div></pre> +#> 2 0.1 80.00563 1.179956 +#> 3 0.2 77.59404 2.312583 +#> 4 0.3 75.25515 3.399424 +#> 5 0.4 72.98675 4.441974 +#> 6 0.5 70.78673 5.441685</div><div class='input'> </div></pre> </div> <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> <h2>Contents</h2> |