diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2019-05-02 13:17:05 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2019-05-02 13:17:05 +0200 |
| commit | 70591022c07f0e8fb4dd67789b7c8d78af8ebc18 (patch) | |
| tree | acaecfce5ae304cfc48b111c6db24a3f2ed5c83d /docs/reference/mkinpredict.html | |
| parent | 380a29e81f88cd80c9c6915200ddc7054c8a085a (diff) | |
Better initials for error model parameters
- Also make it possible to specify initial values for error model
parameters.
- Run tests
- Rebuild docs
Diffstat (limited to 'docs/reference/mkinpredict.html')
| -rw-r--r-- | docs/reference/mkinpredict.html | 56 |
1 files changed, 28 insertions, 28 deletions
diff --git a/docs/reference/mkinpredict.html b/docs/reference/mkinpredict.html index 56c1ed27..4b75603f 100644 --- a/docs/reference/mkinpredict.html +++ b/docs/reference/mkinpredict.html @@ -328,7 +328,7 @@ <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fl'>0</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>20</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>0.1</span>), <span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"eigen"</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#> time parent m1 #> 201 20 4.978707 27.46227</div><div class='output co'>#> User System verstrichen -#> 0.004 0.000 0.003 </div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>( +#> 0.003 0.000 0.003 </div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/system.time'>system.time</a></span>( <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='fu'>mkinpredict</span>(<span class='no'>SFO_SFO</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>k_parent_m1</span> <span class='kw'>=</span> <span class='fl'>0.05</span>, <span class='kw'>k_parent_sink</span> <span class='kw'>=</span> <span class='fl'>0.1</span>, <span class='kw'>k_m1_sink</span> <span class='kw'>=</span> <span class='fl'>0.01</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fl'>0</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>20</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>0.1</span>), <span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"deSolve"</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#> time parent m1 @@ -338,34 +338,34 @@ <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fl'>0</span>), <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>20</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>0.1</span>), <span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"deSolve"</span>, <span class='kw'>use_compiled</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)[<span class='fl'>201</span>,]))</div><div class='output co'>#> time parent m1 #> 201 20 4.978707 27.46227</div><div class='output co'>#> User System verstrichen -#> 0.04 0.00 0.04 </div><div class='input'> +#> 0.021 0.000 0.021 </div><div class='input'> </div><div class='input'> <span class='co'># Predict from a fitted model</span> - <span class='no'>f</span> <span class='kw'><-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_C</span>)</div><div class='output co'>#> Negative log-likelihood at call 1: 552.5739 -#> Negative log-likelihood at call 3: 552.5739 -#> Negative log-likelihood at call 4: 552.5739 -#> Negative log-likelihood at call 6: 279.9345 -#> Negative log-likelihood at call 7: 279.9344 -#> Negative log-likelihood at call 8: 279.9294 -#> Negative log-likelihood at call 9: 279.9294 -#> Negative log-likelihood at call 12: 200.3629 -#> Negative log-likelihood at call 13: 200.3629 -#> Negative log-likelihood at call 18: 197.9039 -#> Negative log-likelihood at call 25: 196.6754 -#> Negative log-likelihood at call 27: 196.6754 -#> Negative log-likelihood at call 32: 196.5742 -#> Negative log-likelihood at call 33: 196.5742 -#> Negative log-likelihood at call 34: 196.5742 -#> Negative log-likelihood at call 38: 196.5361 -#> Negative log-likelihood at call 40: 196.5361 -#> Negative log-likelihood at call 44: 196.5336 -#> Negative log-likelihood at call 45: 196.5336 -#> Negative log-likelihood at call 50: 196.5334 -#> Negative log-likelihood at call 51: 196.5334 -#> Negative log-likelihood at call 52: 196.5334 -#> Negative log-likelihood at call 56: 196.5334 -#> Negative log-likelihood at call 58: 196.5334 -#> Negative log-likelihood at call 59: 196.5334 -#> Negative log-likelihood at call 65: 196.5334 + <span class='no'>f</span> <span class='kw'><-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_C</span>)</div><div class='output co'>#> Sum of squared residuals at call 1: 552.5739 +#> Sum of squared residuals at call 3: 552.5739 +#> Sum of squared residuals at call 4: 552.5739 +#> Sum of squared residuals at call 6: 279.9345 +#> Sum of squared residuals at call 7: 279.9344 +#> Sum of squared residuals at call 8: 279.9294 +#> Sum of squared residuals at call 9: 279.9294 +#> Sum of squared residuals at call 12: 200.3629 +#> Sum of squared residuals at call 13: 200.3629 +#> Sum of squared residuals at call 18: 197.9039 +#> Sum of squared residuals at call 25: 196.6754 +#> Sum of squared residuals at call 27: 196.6754 +#> Sum of squared residuals at call 32: 196.5742 +#> Sum of squared residuals at call 33: 196.5742 +#> Sum of squared residuals at call 34: 196.5742 +#> Sum of squared residuals at call 38: 196.5361 +#> Sum of squared residuals at call 40: 196.5361 +#> Sum of squared residuals at call 44: 196.5336 +#> Sum of squared residuals at call 45: 196.5336 +#> Sum of squared residuals at call 50: 196.5334 +#> Sum of squared residuals at call 51: 196.5334 +#> Sum of squared residuals at call 52: 196.5334 +#> Sum of squared residuals at call 56: 196.5334 +#> Sum of squared residuals at call 58: 196.5334 +#> Sum of squared residuals at call 59: 196.5334 +#> Sum of squared residuals at call 65: 196.5334 #> Negative log-likelihood at call 75: 26.64668 #> Negative log-likelihood at call 103: 26.64668 #> Optimisation successfully terminated.</div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/utils/topics/head'>head</a></span>(<span class='fu'>mkinpredict</span>(<span class='no'>f</span>))</div><div class='output co'>#> time parent m1 |