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authorJohannes Ranke <jranke@uni-bremen.de>2016-11-18 16:28:49 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2016-11-18 16:28:49 +0100
commite7b2d16306b7d03cde66223c9b27abde928f9447 (patch)
tree85d650cfb8e071b00a1228566ec788dc1b477809 /docs/reference/mmkin.html
parent8bdb67360502bd1a8eb5317d287b094510b4a02c (diff)
Improve examples for showing with pkgdown
- Use quiet= TRUE in dontrun sections - Use mkinsub in model definitions - Avoid \code{\link{}} in titles
Diffstat (limited to 'docs/reference/mmkin.html')
-rw-r--r--docs/reference/mmkin.html1107
1 files changed, 24 insertions, 1083 deletions
diff --git a/docs/reference/mmkin.html b/docs/reference/mmkin.html
index 0e39dac0..45a246f9 100644
--- a/docs/reference/mmkin.html
+++ b/docs/reference/mmkin.html
@@ -139,1091 +139,32 @@
<span class='no'>datasets</span> <span class='kw'>&lt;-</span> <span class='fu'>lapply</span>(<span class='no'>synthetic_data_for_UBA_2014</span>[<span class='fl'>1</span>:<span class='fl'>3</span>], <span class='kw'>function</span>(<span class='no'>x</span>) <span class='no'>x</span>$<span class='no'>data</span>)
<span class='fu'>names</span>(<span class='no'>datasets</span>) <span class='kw'>&lt;-</span> <span class='fu'>paste</span>(<span class='st'>"Dataset"</span>, <span class='fl'>1</span>:<span class='fl'>3</span>)
-<span class='no'>time_default</span> <span class='kw'>&lt;-</span> <span class='fu'>system.time</span>(<span class='no'>fits.0</span> <span class='kw'>&lt;-</span> <span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>))
-<span class='no'>time_1</span> <span class='kw'>&lt;-</span> <span class='fu'>system.time</span>(<span class='no'>fits.1</span> <span class='kw'>&lt;-</span> <span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>, <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>))</div><div class='output co'>#&gt; Model cost at call 1 : 31054.59
-#&gt; Model cost at call 3 : 31054.59
-#&gt; Model cost at call 8 : 15089.57
-#&gt; Model cost at call 9 : 11464.3
-#&gt; Model cost at call 11 : 11464.1
-#&gt; Model cost at call 16 : 5723.32
-#&gt; Model cost at call 17 : 5723.318
-#&gt; Model cost at call 19 : 5723.304
-#&gt; Model cost at call 21 : 5723.304
-#&gt; Model cost at call 24 : 3968.126
-#&gt; Model cost at call 25 : 3968.124
-#&gt; Model cost at call 28 : 3968.119
-#&gt; Model cost at call 31 : 3416.421
-#&gt; Model cost at call 32 : 3416.42
-#&gt; Model cost at call 36 : 3416.418
-#&gt; Model cost at call 38 : 866.5564
-#&gt; Model cost at call 42 : 866.5557
-#&gt; Model cost at call 45 : 670.4833
-#&gt; Model cost at call 47 : 670.476
-#&gt; Model cost at call 53 : 312.9905
-#&gt; Model cost at call 57 : 312.9904
-#&gt; Model cost at call 58 : 312.9904
-#&gt; Model cost at call 61 : 287.8916
-#&gt; Model cost at call 63 : 287.8916
-#&gt; Model cost at call 66 : 287.8916
-#&gt; Model cost at call 69 : 284.5441
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-#&gt; Model cost at call 76 : 283.4533
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-#&gt; Model cost at call 83 : 282.1356
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-#&gt; Model cost at call 90 : 280.7846
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-#&gt; Model cost at call 95 : 280.7846
-#&gt; Model cost at call 97 : 278.4856
-#&gt; Model cost at call 98 : 274.5025
-#&gt; Model cost at call 99 : 269.2866
-#&gt; Model cost at call 101 : 269.2866
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-#&gt; Model cost at call 106 : 254.1284
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-#&gt; Model cost at call 112 : 254.128
-#&gt; Model cost at call 114 : 233.1376
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-#&gt; Model cost at call 118 : 233.1375
-#&gt; Model cost at call 121 : 227.5879
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-#&gt; Model cost at call 129 : 217.0041
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-#&gt; Model cost at call 136 : 215.1367
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-#&gt; Model cost at call 143 : 213.3794
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-#&gt; Model cost at call 150 : 211.0201
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-#&gt; Model cost at call 164 : 207.6331
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-#&gt; Model cost at call 171 : 206.2366
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-#&gt; Model cost at call 178 : 204.8117
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-#&gt; Model cost at call 185 : 204.7988
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-#&gt; Model cost at call 199 : 203.354
-#&gt; Model cost at call 201 : 203.354
-#&gt; Model cost at call 204 : 203.354
-#&gt; Model cost at call 206 : 202.6825
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-#&gt; Model cost at call 213 : 202.4582
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-#&gt; Model cost at call 220 : 202.3261
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-#&gt; Model cost at call 234 : 202.115
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-#&gt; Model cost at call 241 : 202.0397
-#&gt; Model cost at call 243 : 202.0397
-#&gt; Model cost at call 248 : 201.8989
-#&gt; Model cost at call 249 : 201.8551
-#&gt; Model cost at call 252 : 201.8551
-#&gt; Model cost at call 257 : 201.676
-#&gt; Model cost at call 259 : 201.676
-#&gt; Model cost at call 264 : 201.6285
-#&gt; Model cost at call 266 : 201.6285
-#&gt; Model cost at call 270 : 201.6284
-#&gt; Model cost at call 271 : 201.5876
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-#&gt; Model cost at call 278 : 201.5317
-#&gt; Model cost at call 279 : 201.5317
-#&gt; Model cost at call 286 : 201.5207
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-#&gt; Model cost at call 289 : 201.5207
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-#&gt; Model cost at call 296 : 201.5174
-#&gt; Model cost at call 301 : 201.5174
-#&gt; Model cost at call 304 : 201.5169
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-#&gt; Model cost at call 322 : 201.5169
-#&gt; Model cost at call 325 : 201.5169
-#&gt; Model cost at call 340 : 201.5169
-#&gt; Optimisation by method Port successfully terminated.
-#&gt; Model cost at call 1 : 35974.4
-#&gt; Model cost at call 3 : 35974.4
-#&gt; Model cost at call 5 : 35974.4
-#&gt; Model cost at call 7 : 35974.4
-#&gt; Model cost at call 9 : 13270.14
-#&gt; Model cost at call 10 : 12432.22
-#&gt; Model cost at call 14 : 12432.12
-#&gt; Model cost at call 16 : 12431.88
-#&gt; Model cost at call 18 : 5356.271
-#&gt; Model cost at call 19 : 5356.268
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-#&gt; Model cost at call 27 : 1507.839
-#&gt; Model cost at call 33 : 1507.839
-#&gt; Model cost at call 35 : 582.0818
-#&gt; Model cost at call 36 : 582.0813
-#&gt; Model cost at call 38 : 582.0802
-#&gt; Model cost at call 40 : 582.0799
-#&gt; Model cost at call 44 : 328.9337
-#&gt; Model cost at call 45 : 328.9335
-#&gt; Model cost at call 51 : 328.9328
-#&gt; Model cost at call 53 : 313.4901
-#&gt; Model cost at call 59 : 313.49
-#&gt; Model cost at call 60 : 313.4899
-#&gt; Model cost at call 61 : 308.6268
-#&gt; Model cost at call 63 : 308.6267
-#&gt; Model cost at call 69 : 302.4454
-#&gt; Model cost at call 73 : 302.4453
-#&gt; Model cost at call 77 : 298.0751
-#&gt; Model cost at call 79 : 298.075
-#&gt; Model cost at call 85 : 293.1404
-#&gt; Model cost at call 86 : 289.6645
-#&gt; Model cost at call 88 : 289.6645
-#&gt; Model cost at call 95 : 288.1617
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-#&gt; Model cost at call 103 : 286.7649
-#&gt; Model cost at call 109 : 286.7649
-#&gt; Model cost at call 111 : 284.5224
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-#&gt; Model cost at call 119 : 281.3466
-#&gt; Model cost at call 125 : 281.3466
-#&gt; Model cost at call 127 : 274.0924
-#&gt; Model cost at call 128 : 264.929
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-#&gt; Model cost at call 146 : 247.7019
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-#&gt; Optimisation by method Port successfully terminated.
-#&gt; Model cost at call 1 : 30689.89
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-#&gt; Model cost at call 8 : 16294.04
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-#&gt; Model cost at call 268 : 1098.204
-#&gt; Model cost at call 269 : 1098.196
-#&gt; Model cost at call 270 : 1098.187
-#&gt; Model cost at call 272 : 1098.187
-#&gt; Model cost at call 273 : 1098.187
-#&gt; Model cost at call 279 : 1098.181
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-#&gt; Model cost at call 284 : 1098.181
-#&gt; Model cost at call 285 : 1098.181
-#&gt; Model cost at call 287 : 1098.172
-#&gt; Model cost at call 291 : 1098.172
-#&gt; Model cost at call 293 : 1098.172
-#&gt; Model cost at call 294 : 1098.169
-#&gt; Model cost at call 295 : 1098.169
-#&gt; Model cost at call 296 : 1098.169
-#&gt; Model cost at call 301 : 1098.169
-#&gt; Model cost at call 305 : 1098.169
-#&gt; Model cost at call 306 : 1098.169
-#&gt; Model cost at call 309 : 1098.169
-#&gt; Model cost at call 314 : 1098.169
-#&gt; Model cost at call 318 : 1098.169
-#&gt; Model cost at call 319 : 1098.169
-#&gt; Model cost at call 321 : 1098.169
-#&gt; Model cost at call 324 : 1098.169
-#&gt; Model cost at call 325 : 1098.169
-#&gt; Model cost at call 331 : 1098.169
-#&gt; Model cost at call 333 : 1098.169
-#&gt; Model cost at call 336 : 1098.169
-#&gt; Model cost at call 342 : 1098.169
-#&gt; Model cost at call 344 : 1098.169
-#&gt; Model cost at call 348 : 1098.169
-#&gt; Model cost at call 352 : 1098.169
-#&gt; Model cost at call 357 : 1098.169
-#&gt; Model cost at call 370 : 1098.169
-#&gt; Model cost at call 385 : 1098.169
-#&gt; Model cost at call 386 : 1098.169
-#&gt; Optimisation by method Port successfully terminated.
-#&gt; Model cost at call 1 : 34499.23
-#&gt; Model cost at call 3 : 34499.23
-#&gt; Model cost at call 5 : 34499.23
-#&gt; Model cost at call 7 : 34499.23
-#&gt; Model cost at call 9 : 14274.95
-#&gt; Model cost at call 10 : 14162.89
-#&gt; Model cost at call 14 : 14162.68
-#&gt; Model cost at call 18 : 13341.49
-#&gt; Model cost at call 19 : 13341.48
-#&gt; Model cost at call 20 : 13341.47
-#&gt; Model cost at call 22 : 13341.44
-#&gt; Model cost at call 27 : 10055.95
-#&gt; Model cost at call 28 : 10055.95
-#&gt; Model cost at call 30 : 10055.95
-#&gt; Model cost at call 35 : 7732.384
-#&gt; Model cost at call 36 : 7732.381
-#&gt; Model cost at call 39 : 7732.381
-#&gt; Model cost at call 44 : 6325.124
-#&gt; Model cost at call 45 : 6325.122
-#&gt; Model cost at call 47 : 6325.117
-#&gt; Model cost at call 52 : 3732.612
-#&gt; Model cost at call 54 : 3732.611
-#&gt; Model cost at call 61 : 1371.768
-#&gt; Model cost at call 64 : 1371.768
-#&gt; Model cost at call 67 : 1371.768
-#&gt; Model cost at call 70 : 1302.633
-#&gt; Model cost at call 74 : 1302.633
-#&gt; Model cost at call 75 : 1302.633
-#&gt; Model cost at call 78 : 1298.854
-#&gt; Model cost at call 82 : 1298.854
-#&gt; Model cost at call 84 : 1298.854
-#&gt; Model cost at call 86 : 1245.775
-#&gt; Model cost at call 91 : 1245.775
-#&gt; Model cost at call 94 : 1230.679
-#&gt; Model cost at call 96 : 1230.679
-#&gt; Model cost at call 100 : 1230.679
-#&gt; Model cost at call 103 : 1227.471
-#&gt; Model cost at call 105 : 1227.471
-#&gt; Model cost at call 109 : 1227.471
-#&gt; Model cost at call 111 : 1225.318
-#&gt; Model cost at call 113 : 1225.318
-#&gt; Model cost at call 117 : 1225.318
-#&gt; Model cost at call 118 : 1225.318
-#&gt; Model cost at call 119 : 1221.478
-#&gt; Model cost at call 121 : 1221.478
-#&gt; Model cost at call 127 : 1214.191
-#&gt; Model cost at call 128 : 1203.986
-#&gt; Model cost at call 129 : 1164.433
-#&gt; Model cost at call 135 : 1164.433
-#&gt; Model cost at call 140 : 1158.843
-#&gt; Model cost at call 145 : 1158.843
-#&gt; Model cost at call 148 : 1156.585
-#&gt; Model cost at call 154 : 1156.585
-#&gt; Model cost at call 156 : 1155.177
-#&gt; Model cost at call 159 : 1155.177
-#&gt; Model cost at call 161 : 1155.176
-#&gt; Model cost at call 164 : 1151.603
-#&gt; Model cost at call 166 : 1151.603
-#&gt; Model cost at call 167 : 1151.603
-#&gt; Model cost at call 169 : 1151.603
-#&gt; Model cost at call 173 : 1150.467
-#&gt; Model cost at call 175 : 1150.467
-#&gt; Model cost at call 176 : 1150.467
-#&gt; Model cost at call 181 : 1150.117
-#&gt; Model cost at call 184 : 1150.117
-#&gt; Model cost at call 185 : 1150.117
-#&gt; Model cost at call 187 : 1150.117
-#&gt; Model cost at call 188 : 1150.117
-#&gt; Model cost at call 189 : 1149.03
-#&gt; Model cost at call 193 : 1149.03
-#&gt; Model cost at call 195 : 1149.03
-#&gt; Model cost at call 197 : 1148.468
-#&gt; Model cost at call 199 : 1148.468
-#&gt; Model cost at call 205 : 1147.297
-#&gt; Model cost at call 207 : 1147.297
-#&gt; Model cost at call 211 : 1147.297
-#&gt; Model cost at call 213 : 1146.841
-#&gt; Model cost at call 216 : 1146.841
-#&gt; Model cost at call 217 : 1146.841
-#&gt; Model cost at call 219 : 1146.841
-#&gt; Model cost at call 221 : 1144.548
-#&gt; Model cost at call 223 : 1144.548
-#&gt; Model cost at call 229 : 1143.258
-#&gt; Model cost at call 231 : 1143.258
-#&gt; Model cost at call 237 : 1141.772
-#&gt; Model cost at call 239 : 1141.772
-#&gt; Model cost at call 240 : 1141.772
-#&gt; Model cost at call 241 : 1141.772
-#&gt; Model cost at call 243 : 1141.772
-#&gt; Model cost at call 245 : 1140.849
-#&gt; Model cost at call 251 : 1140.849
-#&gt; Model cost at call 252 : 1140.849
-#&gt; Model cost at call 253 : 1139.456
-#&gt; Model cost at call 259 : 1139.456
-#&gt; Model cost at call 261 : 1137.678
-#&gt; Model cost at call 263 : 1137.678
-#&gt; Model cost at call 269 : 1135.358
-#&gt; Model cost at call 270 : 1134.128
-#&gt; Model cost at call 272 : 1134.128
-#&gt; Model cost at call 280 : 1133.342
-#&gt; Model cost at call 283 : 1133.342
-#&gt; Model cost at call 286 : 1133.342
-#&gt; Model cost at call 288 : 1133.229
-#&gt; Model cost at call 292 : 1133.229
-#&gt; Model cost at call 294 : 1133.229
-#&gt; Model cost at call 295 : 1133.229
-#&gt; Model cost at call 296 : 1132.641
-#&gt; Model cost at call 300 : 1132.641
-#&gt; Model cost at call 304 : 1132.126
-#&gt; Model cost at call 310 : 1132.126
-#&gt; Model cost at call 312 : 1131.169
-#&gt; Model cost at call 318 : 1131.169
-#&gt; Model cost at call 320 : 1130.405
-#&gt; Model cost at call 324 : 1130.405
-#&gt; Model cost at call 328 : 1129.635
-#&gt; Model cost at call 330 : 1129.635
-#&gt; Model cost at call 332 : 1129.635
-#&gt; Model cost at call 334 : 1129.635
-#&gt; Model cost at call 336 : 1128.526
-#&gt; Model cost at call 338 : 1128.526
-#&gt; Model cost at call 343 : 1128.526
-#&gt; Model cost at call 344 : 1127.498
-#&gt; Model cost at call 346 : 1127.498
-#&gt; Model cost at call 350 : 1127.498
-#&gt; Model cost at call 352 : 1126.06
-#&gt; Model cost at call 353 : 1124.911
-#&gt; Model cost at call 356 : 1124.911
-#&gt; Model cost at call 362 : 1120.309
-#&gt; Model cost at call 366 : 1120.309
-#&gt; Model cost at call 368 : 1120.308
-#&gt; Model cost at call 369 : 1120.308
-#&gt; Model cost at call 370 : 1117.687
-#&gt; Model cost at call 374 : 1117.687
-#&gt; Model cost at call 375 : 1117.687
-#&gt; Model cost at call 378 : 1112.013
-#&gt; Model cost at call 379 : 1112.013
-#&gt; Model cost at call 381 : 1112.013
-#&gt; Model cost at call 386 : 1108.648
-#&gt; Model cost at call 387 : 1108.251
-#&gt; Model cost at call 388 : 1108.251
-#&gt; Model cost at call 391 : 1108.251
-#&gt; Model cost at call 392 : 1108.251
-#&gt; Model cost at call 395 : 1104.73
-#&gt; Model cost at call 396 : 1104.73
-#&gt; Model cost at call 397 : 1104.73
-#&gt; Model cost at call 403 : 1103.277
-#&gt; Model cost at call 404 : 1103.277
-#&gt; Model cost at call 411 : 1101.351
-#&gt; Model cost at call 414 : 1101.351
-#&gt; Model cost at call 416 : 1101.351
-#&gt; Model cost at call 417 : 1101.351
-#&gt; Model cost at call 419 : 1100.36
-#&gt; Model cost at call 420 : 1100.36
-#&gt; Model cost at call 421 : 1100.36
-#&gt; Model cost at call 427 : 1099.596
-#&gt; Model cost at call 431 : 1099.596
-#&gt; Model cost at call 432 : 1099.596
-#&gt; Model cost at call 435 : 1099.029
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-#&gt; Model cost at call 444 : 1098.722
-#&gt; Model cost at call 447 : 1098.722
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-#&gt; Model cost at call 453 : 1098.441
-#&gt; Model cost at call 455 : 1098.441
-#&gt; Model cost at call 458 : 1098.441
-#&gt; Model cost at call 463 : 1098.314
-#&gt; Model cost at call 464 : 1098.314
-#&gt; Model cost at call 469 : 1098.314
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-#&gt; Model cost at call 475 : 1098.245
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-#&gt; Model cost at call 486 : 1098.209
-#&gt; Model cost at call 487 : 1098.209
-#&gt; Model cost at call 489 : 1098.209
-#&gt; Model cost at call 493 : 1098.209
-#&gt; Model cost at call 505 : 1098.209
-#&gt; Model cost at call 506 : 1098.209
-#&gt; Model cost at call 510 : 1098.209
-#&gt; Model cost at call 518 : 1098.209
-#&gt; Model cost at call 519 : 1098.209
-#&gt; Model cost at call 522 : 1098.209
-#&gt; Model cost at call 526 : 1098.209
-#&gt; Model cost at call 528 : 1098.209
-#&gt; Model cost at call 530 : 1098.209
-#&gt; Model cost at call 533 : 1098.209
-#&gt; Model cost at call 534 : 1098.209
-#&gt; Model cost at call 536 : 1098.209
-#&gt; Model cost at call 542 : 1098.209
-#&gt; Model cost at call 549 : 1098.207
-#&gt; Model cost at call 551 : 1098.207
-#&gt; Model cost at call 552 : 1098.207
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-#&gt; Model cost at call 564 : 1098.205
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-#&gt; Model cost at call 567 : 1098.205
-#&gt; Model cost at call 570 : 1098.205
-#&gt; Model cost at call 579 : 1098.2
-#&gt; Model cost at call 580 : 1098.191
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-#&gt; Model cost at call 586 : 1098.191
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-#&gt; Model cost at call 595 : 1098.186
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-#&gt; Model cost at call 606 : 1098.18
-#&gt; Model cost at call 609 : 1098.18
-#&gt; Model cost at call 610 : 1098.18
-#&gt; Model cost at call 616 : 1098.177
-#&gt; Model cost at call 619 : 1098.177
-#&gt; Model cost at call 620 : 1098.177
-#&gt; Model cost at call 627 : 1098.173
-#&gt; Model cost at call 630 : 1098.173
-#&gt; Model cost at call 631 : 1098.173
-#&gt; Model cost at call 636 : 1098.173
-#&gt; Model cost at call 641 : 1098.172
-#&gt; Model cost at call 642 : 1098.172
-#&gt; Model cost at call 653 : 1098.172
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-#&gt; Model cost at call 664 : 1098.172
-#&gt; Model cost at call 669 : 1098.172
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-#&gt; Model cost at call 702 : 1098.172
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-#&gt; Model cost at call 800 : 1098.172
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-#&gt; Model cost at call 890 : 1098.17
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-#&gt; Model cost at call 904 : 1098.169
-#&gt; Model cost at call 905 : 1098.169
-#&gt; Model cost at call 908 : 1098.169
-#&gt; Model cost at call 909 : 1098.169
-#&gt; Model cost at call 919 : 1098.169
-#&gt; Model cost at call 921 : 1098.169
-#&gt; Model cost at call 931 : 1098.169
-#&gt; Model cost at call 932 : 1098.169
-#&gt; Model cost at call 934 : 1098.169
-#&gt; Model cost at call 936 : 1098.169
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-#&gt; Model cost at call 944 : 1098.169
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-#&gt; Model cost at call 964 : 1098.169
-#&gt; Model cost at call 967 : 1098.169
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-#&gt; Model cost at call 1017 : 1098.169
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-#&gt; Model cost at call 1120 : 1098.169
-#&gt; Model cost at call 1124 : 1098.169
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-#&gt; Model cost at call 1185 : 1098.169
-#&gt; Model cost at call 1200 : 1098.169
-#&gt; Model cost at call 1215 : 1098.169
-#&gt; Model cost at call 1231 : 1098.169
-#&gt; Model cost at call 1246 : 1098.169
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-#&gt; Model cost at call 1258 : 1098.169
-#&gt; Model cost at call 1263 : 1098.169
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-#&gt; Model cost at call 1298 : 1098.169
-#&gt; Model cost at call 1306 : 1098.169
-#&gt; Model cost at call 1308 : 1098.169
-#&gt; Optimisation by method Port successfully terminated.
-#&gt; Model cost at call 1 : 31389.19
-#&gt; Model cost at call 3 : 31389.19
-#&gt; Model cost at call 8 : 15003.41
-#&gt; Model cost at call 9 : 11136.21
-#&gt; Model cost at call 11 : 11135.87
-#&gt; Model cost at call 16 : 4800.182
-#&gt; Model cost at call 17 : 4800.181
-#&gt; Model cost at call 19 : 4800.163
-#&gt; Model cost at call 24 : 3036.068
-#&gt; Model cost at call 25 : 3036.068
-#&gt; Model cost at call 26 : 3036.052
-#&gt; Model cost at call 31 : 1361.371
-#&gt; Model cost at call 33 : 1361.371
-#&gt; Model cost at call 40 : 494.6738
-#&gt; Model cost at call 41 : 494.6736
-#&gt; Model cost at call 45 : 494.6734
-#&gt; Model cost at call 48 : 260.2631
-#&gt; Model cost at call 49 : 260.2629
-#&gt; Model cost at call 55 : 248.3035
-#&gt; Model cost at call 56 : 248.3034
-#&gt; Model cost at call 57 : 248.3023
-#&gt; Model cost at call 62 : 171.6337
-#&gt; Model cost at call 63 : 171.6337
-#&gt; Model cost at call 70 : 167.3473
-#&gt; Model cost at call 72 : 167.3473
-#&gt; Model cost at call 73 : 167.3473
-#&gt; Model cost at call 78 : 165.9868
-#&gt; Model cost at call 80 : 165.9868
-#&gt; Model cost at call 83 : 165.9868
-#&gt; Model cost at call 85 : 165.2025
-#&gt; Model cost at call 87 : 165.2024
-#&gt; Model cost at call 92 : 163.5932
-#&gt; Model cost at call 94 : 163.5932
-#&gt; Model cost at call 96 : 163.5932
-#&gt; Model cost at call 99 : 159.4289
-#&gt; Model cost at call 100 : 147.5939
-#&gt; Model cost at call 105 : 147.5939
-#&gt; Model cost at call 108 : 139.3925
-#&gt; Model cost at call 113 : 139.3925
-#&gt; Model cost at call 115 : 139.392
-#&gt; Model cost at call 116 : 123.9799
-#&gt; Model cost at call 117 : 123.9798
-#&gt; Model cost at call 118 : 123.9795
-#&gt; Model cost at call 124 : 103.8653
-#&gt; Model cost at call 125 : 103.8653
-#&gt; Model cost at call 126 : 103.8652
-#&gt; Model cost at call 131 : 96.14276
-#&gt; Model cost at call 134 : 96.14275
-#&gt; Model cost at call 135 : 96.14274
-#&gt; Model cost at call 139 : 95.96056
-#&gt; Model cost at call 141 : 95.96056
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-#&gt; Model cost at call 146 : 95.90851
-#&gt; Model cost at call 148 : 95.9085
-#&gt; Model cost at call 153 : 95.84671
-#&gt; Model cost at call 155 : 95.8467
-#&gt; Model cost at call 161 : 95.82479
-#&gt; Model cost at call 163 : 95.82479
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-#&gt; Model cost at call 168 : 95.81938
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-#&gt; Model cost at call 184 : 95.8118
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-#&gt; Model cost at call 191 : 95.80885
-#&gt; Model cost at call 192 : 95.80353
-#&gt; Model cost at call 193 : 95.78121
-#&gt; Model cost at call 194 : 95.72164
-#&gt; Model cost at call 197 : 95.72164
-#&gt; Model cost at call 201 : 95.72163
-#&gt; Model cost at call 206 : 95.71206
-#&gt; Model cost at call 208 : 95.71205
-#&gt; Model cost at call 213 : 95.70874
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-#&gt; Model cost at call 219 : 95.70874
-#&gt; Model cost at call 221 : 95.70751
-#&gt; Model cost at call 222 : 95.70404
-#&gt; Model cost at call 223 : 95.69259
-#&gt; Model cost at call 224 : 95.68092
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-#&gt; Model cost at call 273 : 95.66822
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-#&gt; Model cost at call 295 : 95.66805
-#&gt; Model cost at call 297 : 95.66805
-#&gt; Model cost at call 298 : 95.66805
-#&gt; Model cost at call 302 : 95.66805
-#&gt; Model cost at call 304 : 95.66805
-#&gt; Model cost at call 306 : 95.66805
-#&gt; Model cost at call 309 : 95.66805
-#&gt; Model cost at call 314 : 95.66805
-#&gt; Model cost at call 315 : 95.66805
-#&gt; Model cost at call 328 : 95.66805
-#&gt; Optimisation by method Port successfully terminated.
-#&gt; Model cost at call 1 : 36597.78
-#&gt; Model cost at call 3 : 36597.78
-#&gt; Model cost at call 5 : 36597.78
-#&gt; Model cost at call 7 : 36597.78
-#&gt; Model cost at call 9 : 13188.26
-#&gt; Model cost at call 10 : 12648.25
-#&gt; Model cost at call 14 : 12648.13
-#&gt; Model cost at call 16 : 12647.92
-#&gt; Model cost at call 18 : 6148.715
-#&gt; Model cost at call 19 : 6148.712
-#&gt; Model cost at call 20 : 6148.695
-#&gt; Model cost at call 22 : 6148.683
-#&gt; Model cost at call 27 : 1490.597
-#&gt; Model cost at call 33 : 1490.597
-#&gt; Model cost at call 35 : 594.2031
-#&gt; Model cost at call 36 : 594.2023
-#&gt; Model cost at call 38 : 594.201
-#&gt; Model cost at call 40 : 594.2009
-#&gt; Model cost at call 44 : 230.6504
-#&gt; Model cost at call 45 : 230.6503
-#&gt; Model cost at call 48 : 230.6503
-#&gt; Model cost at call 50 : 230.6495
-#&gt; Model cost at call 51 : 230.6494
-#&gt; Model cost at call 53 : 186.2336
-#&gt; Model cost at call 57 : 186.2336
-#&gt; Model cost at call 59 : 186.2336
-#&gt; Model cost at call 60 : 186.2336
-#&gt; Model cost at call 62 : 181.3507
-#&gt; Model cost at call 66 : 181.3507
-#&gt; Model cost at call 70 : 180.733
-#&gt; Model cost at call 74 : 180.733
-#&gt; Model cost at call 76 : 180.7329
-#&gt; Model cost at call 77 : 180.7329
-#&gt; Model cost at call 78 : 175.5254
-#&gt; Model cost at call 80 : 175.5253
-#&gt; Model cost at call 86 : 173.1139
-#&gt; Model cost at call 88 : 173.1139
-#&gt; Model cost at call 94 : 168.0503
-#&gt; Model cost at call 96 : 168.0502
-#&gt; Model cost at call 102 : 164.9084
-#&gt; Model cost at call 104 : 164.9084
-#&gt; Model cost at call 105 : 164.9084
-#&gt; Model cost at call 110 : 159.7912
-#&gt; Model cost at call 112 : 159.7912
-#&gt; Model cost at call 113 : 159.7912
-#&gt; Model cost at call 116 : 159.7911
-#&gt; Model cost at call 117 : 159.7911
-#&gt; Model cost at call 118 : 158.6003
-#&gt; Model cost at call 122 : 158.6002
-#&gt; Model cost at call 124 : 158.6002
-#&gt; Model cost at call 126 : 150.4132
-#&gt; Model cost at call 132 : 150.4132
-#&gt; Model cost at call 133 : 150.4132
-#&gt; Model cost at call 134 : 146.5123
-#&gt; Model cost at call 140 : 146.5122
-#&gt; Model cost at call 142 : 136.6018
-#&gt; Model cost at call 145 : 136.6018
-#&gt; Model cost at call 149 : 136.6018
-#&gt; Model cost at call 150 : 133.91
-#&gt; Model cost at call 153 : 133.91
-#&gt; Model cost at call 155 : 133.91
-#&gt; Model cost at call 156 : 133.91
-#&gt; Model cost at call 158 : 124.7878
-#&gt; Model cost at call 162 : 124.7878
-#&gt; Model cost at call 163 : 124.7878
-#&gt; Model cost at call 167 : 124.2615
-#&gt; Model cost at call 169 : 124.2614
-#&gt; Model cost at call 170 : 124.2614
-#&gt; Model cost at call 175 : 123.2425
-#&gt; Model cost at call 179 : 123.2425
-#&gt; Model cost at call 180 : 123.2425
-#&gt; Model cost at call 181 : 123.2425
-#&gt; Model cost at call 182 : 123.2425
-#&gt; Model cost at call 183 : 120.7214
-#&gt; Model cost at call 185 : 120.7214
-#&gt; Model cost at call 191 : 119.2706
-#&gt; Model cost at call 192 : 117.872
-#&gt; Model cost at call 193 : 114.6257
-#&gt; Model cost at call 198 : 114.6257
-#&gt; Model cost at call 201 : 111.8985
-#&gt; Model cost at call 203 : 111.8985
-#&gt; Model cost at call 206 : 111.8984
-#&gt; Model cost at call 209 : 111.6987
-#&gt; Model cost at call 212 : 111.6987
-#&gt; Model cost at call 213 : 111.6986
-#&gt; Model cost at call 217 : 107.9995
-#&gt; Model cost at call 219 : 107.9995
-#&gt; Model cost at call 225 : 106.1322
-#&gt; Model cost at call 226 : 104.6907
-#&gt; Model cost at call 227 : 104.6316
-#&gt; Model cost at call 229 : 104.6316
-#&gt; Model cost at call 232 : 104.6315
-#&gt; Model cost at call 239 : 103.3421
-#&gt; Model cost at call 245 : 103.3421
-#&gt; Model cost at call 246 : 103.3421
-#&gt; Model cost at call 247 : 103.1772
-#&gt; Model cost at call 248 : 103.1772
-#&gt; Model cost at call 249 : 103.1772
-#&gt; Model cost at call 250 : 103.1772
-#&gt; Model cost at call 253 : 103.1772
-#&gt; Model cost at call 255 : 102.8623
-#&gt; Model cost at call 256 : 102.8623
-#&gt; Model cost at call 262 : 102.8623
-#&gt; Model cost at call 263 : 102.6013
-#&gt; Model cost at call 266 : 102.6013
-#&gt; Model cost at call 271 : 102.0341
-#&gt; Model cost at call 272 : 101.25
-#&gt; Model cost at call 273 : 99.17557
-#&gt; Model cost at call 274 : 99.17556
-#&gt; Model cost at call 282 : 99.06481
-#&gt; Model cost at call 284 : 99.06479
-#&gt; Model cost at call 290 : 98.57515
-#&gt; Model cost at call 294 : 98.57514
-#&gt; Model cost at call 296 : 98.57514
-#&gt; Model cost at call 298 : 98.05781
-#&gt; Model cost at call 304 : 98.05781
-#&gt; Model cost at call 305 : 98.05781
-#&gt; Model cost at call 306 : 97.81766
-#&gt; Model cost at call 307 : 97.63972
-#&gt; Model cost at call 308 : 97.63971
-#&gt; Model cost at call 315 : 97.15447
-#&gt; Model cost at call 317 : 97.15447
-#&gt; Model cost at call 321 : 97.15446
-#&gt; Model cost at call 323 : 96.25231
-#&gt; Model cost at call 324 : 96.25231
-#&gt; Model cost at call 328 : 96.25231
-#&gt; Model cost at call 331 : 95.48051
-#&gt; Model cost at call 334 : 95.4805
-#&gt; Model cost at call 339 : 95.08754
-#&gt; Model cost at call 341 : 95.08754
-#&gt; Model cost at call 347 : 94.9916
-#&gt; Model cost at call 348 : 94.9916
-#&gt; Model cost at call 350 : 94.9916
-#&gt; Model cost at call 355 : 94.93856
-#&gt; Model cost at call 356 : 94.93856
-#&gt; Model cost at call 357 : 94.93856
-#&gt; Model cost at call 363 : 94.92067
-#&gt; Model cost at call 366 : 94.92067
-#&gt; Model cost at call 367 : 94.92067
-#&gt; Model cost at call 369 : 94.92067
-#&gt; Model cost at call 370 : 94.92067
-#&gt; Model cost at call 371 : 94.91762
-#&gt; Model cost at call 372 : 94.91762
-#&gt; Model cost at call 373 : 94.91762
-#&gt; Model cost at call 379 : 94.91744
-#&gt; Model cost at call 380 : 94.91744
-#&gt; Model cost at call 385 : 94.91744
-#&gt; Model cost at call 387 : 94.91744
-#&gt; Model cost at call 393 : 94.91743
-#&gt; Model cost at call 394 : 94.91743
-#&gt; Model cost at call 404 : 94.91743
-#&gt; Model cost at call 407 : 94.91743
-#&gt; Model cost at call 408 : 94.91743
-#&gt; Model cost at call 423 : 94.91743
-#&gt; Model cost at call 442 : 94.91743
-#&gt; Model cost at call 446 : 94.91743
-#&gt; Model cost at call 447 : 94.91743
-#&gt; Optimisation by method Port successfully terminated.</div><div class='input'>
+<span class='no'>time_default</span> <span class='kw'>&lt;-</span> <span class='fu'>system.time</span>(<span class='no'>fits.0</span> <span class='kw'>&lt;-</span> <span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>))
+<span class='no'>time_1</span> <span class='kw'>&lt;-</span> <span class='fu'>system.time</span>(<span class='no'>fits.4</span> <span class='kw'>&lt;-</span> <span class='fu'>mmkin</span>(<span class='no'>models</span>, <span class='no'>datasets</span>, <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>))
+
<span class='no'>time_default</span></div><div class='output co'>#&gt; user system elapsed
-#&gt; 16.180 0.132 9.130 </div><div class='input'><span class='no'>time_1</span></div><div class='output co'>#&gt; user system elapsed
-#&gt; 22.856 0.000 22.858 </div><div class='input'>
-<span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fits</span><span class='kw'>[[</span><span class='st'>"SFO_lin"</span>, <span class='fl'>2</span>]])</div><div class='output co'>#&gt; <span class='error'>Error in endpoints(fits[[&quot;SFO_lin&quot;, 2]]): Objekt &#39;fits&#39; nicht gefunden</span></div><div class='input'>
-<span class='co'># Plot.mkinfit handles rows or columns of mmkin result objects</span>
-<span class='fu'>plot</span>(<span class='no'>fits.0</span>[<span class='fl'>1</span>, ])</div><img src='mmkin-14.png' alt='' width='540' height='400' /><div class='input'><span class='fu'>plot</span>(<span class='no'>fits.0</span>[<span class='fl'>1</span>, ], <span class='kw'>obs_var</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"M1"</span>, <span class='st'>"M2"</span>))</div><img src='mmkin-16.png' alt='' width='540' height='400' /><div class='input'><span class='fu'>plot</span>(<span class='no'>fits.0</span>[, <span class='fl'>1</span>])</div><img src='mmkin-18.png' alt='' width='540' height='400' /><div class='input'><span class='co'># Use double brackets to extract a single mkinfit object, which will be plotted</span>
-<span class='co'># by plot.mkinfit</span>
-<span class='fu'>plot</span>(<span class='no'>fits.0</span><span class='kw'>[[</span><span class='fl'>1</span>, <span class='fl'>1</span>]], <span class='kw'>sep_obs</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>show_residuals</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>show_errmin</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><img src='mmkin-20.png' alt='' width='540' height='400' /><div class='input'><span class='co'># Plotting with mmkin (single brackets, extracting an mmkin object) does not</span>
+#&gt; 17.340 0.088 9.561 </div><div class='input'><span class='no'>time_1</span></div><div class='output co'>#&gt; user system elapsed
+#&gt; 22.868 0.000 22.866 </div><div class='input'>
+<span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fits.0</span><span class='kw'>[[</span><span class='st'>"SFO_lin"</span>, <span class='fl'>2</span>]])</div><div class='output co'>#&gt; $ff
+#&gt; parent_M1 parent_sink M1_M2 M1_sink
+#&gt; 0.7340479 0.2659521 0.7505687 0.2494313
+#&gt;
+#&gt; $SFORB
+#&gt; logical(0)
+#&gt;
+#&gt; $distimes
+#&gt; DT50 DT90
+#&gt; parent 0.8777688 2.915885
+#&gt; M1 2.3257456 7.725960
+#&gt; M2 33.7200881 112.015708
+#&gt; </div><div class='input'>
+<span class='co'># plot.mkinfit handles rows or columns of mmkin result objects</span>
+<span class='fu'>plot</span>(<span class='no'>fits.0</span>[<span class='fl'>1</span>, ])</div><img src='mmkin-12.png' alt='' width='540' height='400' /><div class='input'><span class='fu'>plot</span>(<span class='no'>fits.0</span>[<span class='fl'>1</span>, ], <span class='kw'>obs_var</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"M1"</span>, <span class='st'>"M2"</span>))</div><img src='mmkin-14.png' alt='' width='540' height='400' /><div class='input'><span class='fu'>plot</span>(<span class='no'>fits.0</span>[, <span class='fl'>1</span>])</div><img src='mmkin-16.png' alt='' width='540' height='400' /><div class='input'><span class='co'># Use double brackets to extract a single mkinfit object, which will be plotted</span>
+<span class='co'># by plot.mkinfit and can be plotted using plot_sep</span>
+<span class='fu'>plot</span>(<span class='no'>fits.0</span><span class='kw'>[[</span><span class='fl'>1</span>, <span class='fl'>1</span>]], <span class='kw'>sep_obs</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>show_residuals</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>show_errmin</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><img src='mmkin-18.png' alt='' width='540' height='400' /><div class='input'><span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>fits.0</span><span class='kw'>[[</span><span class='fl'>1</span>, <span class='fl'>1</span>]])
+<span class='co'># Plotting with mmkin (single brackets, extracting an mmkin object) does not</span>
<span class='co'># allow to plot the observed variables separately</span>
-<span class='fu'>plot</span>(<span class='no'>fits.0</span>[<span class='fl'>1</span>, <span class='fl'>1</span>])</div><img src='mmkin-22.png' alt='' width='540' height='400' /><div class='input'>
+<span class='fu'>plot</span>(<span class='no'>fits.0</span>[<span class='fl'>1</span>, <span class='fl'>1</span>])</div><img src='mmkin-20.png' alt='' width='540' height='400' /><div class='input'>
</div></pre>
</div>
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