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authorJohannes Ranke <jranke@uni-bremen.de>2019-04-10 10:17:35 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2019-04-10 10:17:35 +0200
commit194659fcaccdd1ee37851725b8c72e99daa3a8cf (patch)
treeedbbebe8956000b9eb725ca425b91e051571ec02 /docs/reference/nafta.html
parent5814be02f286ce96d6cff8d698aea6844e4025f1 (diff)
Adapt tests, vignettes and examples
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
Diffstat (limited to 'docs/reference/nafta.html')
-rw-r--r--docs/reference/nafta.html30
1 files changed, 16 insertions, 14 deletions
diff --git a/docs/reference/nafta.html b/docs/reference/nafta.html
index f12e24e0..93bc3955 100644
--- a/docs/reference/nafta.html
+++ b/docs/reference/nafta.html
@@ -65,7 +65,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.48.1</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.4</span>
</span>
</div>
@@ -182,8 +182,7 @@
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'> <span class='no'>nafta_evaluation</span> <span class='kw'>&lt;-</span> <span class='fu'>nafta</span>(<span class='no'>NAFTA_SOP_Appendix_D</span>, <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Calculation of the Jacobian failed for the cost function of the untransformed model.</span>
-#&gt; <span class='warning'>No t-test results will be available</span></div><div class='output co'>#&gt; <span class='message'>The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></div><div class='output co'>#&gt; <span class='message'>The representative half-life of the IORE model is longer than the one corresponding</span></div><div class='output co'>#&gt; <span class='message'>to the terminal degradation rate found with the DFOP model.</span></div><div class='output co'>#&gt; <span class='message'>The representative half-life obtained from the DFOP model may be used</span></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='no'>nafta_evaluation</span>)</div><div class='output co'>#&gt; Sums of squares:
+ <pre class="examples"><div class='input'> <span class='no'>nafta_evaluation</span> <span class='kw'>&lt;-</span> <span class='fu'>nafta</span>(<span class='no'>NAFTA_SOP_Appendix_D</span>, <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>)</div><div class='output co'>#&gt; <span class='message'>The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></div><div class='output co'>#&gt; <span class='message'>The representative half-life of the IORE model is longer than the one corresponding</span></div><div class='output co'>#&gt; <span class='message'>to the terminal degradation rate found with the DFOP model.</span></div><div class='output co'>#&gt; <span class='message'>The representative half-life obtained from the DFOP model may be used</span></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='no'>nafta_evaluation</span>)</div><div class='output co'>#&gt; Sums of squares:
#&gt; SFO IORE DFOP
#&gt; 1378.6832 615.7730 517.8836
#&gt;
@@ -192,22 +191,25 @@
#&gt;
#&gt; Parameters:
#&gt; $SFO
-#&gt; Estimate Pr(&gt;t) Lower Upper
-#&gt; parent_0 83.7558 8.08e-15 76.92822 90.58328
-#&gt; k_parent_sink 0.0017 7.45e-05 0.00111 0.00262
+#&gt; Estimate Pr(&gt;t) Lower Upper
+#&gt; parent_0 83.7558 1.80e-14 77.18268 90.3288
+#&gt; k_parent_sink 0.0017 7.43e-05 0.00112 0.0026
+#&gt; sigma 8.7518 1.22e-05 5.64278 11.8608
#&gt;
#&gt; $IORE
#&gt; Estimate Pr(&gt;t) Lower Upper
-#&gt; parent_0 9.69e+01 NA 8.75e+01 1.06e+02
-#&gt; k__iore_parent_sink 8.40e-14 NA 1.09e-19 6.47e-08
-#&gt; N_parent 6.68e+00 NA 3.54e+00 9.83e+00
+#&gt; parent_0 9.69e+01 NA 8.88e+01 1.05e+02
+#&gt; k__iore_parent_sink 8.40e-14 NA 1.79e-18 3.94e-09
+#&gt; N_parent 6.68e+00 NA 4.19e+00 9.17e+00
+#&gt; sigma 5.85e+00 NA 3.76e+00 7.94e+00
#&gt;
#&gt; $DFOP
#&gt; Estimate Pr(&gt;t) Lower Upper
-#&gt; parent_0 9.76e+01 4.44e-13 8.88e+01 1.06e+02
-#&gt; k1 4.24e-02 3.55e-02 1.41e-02 1.27e-01
-#&gt; k2 8.24e-04 2.06e-02 3.17e-04 2.14e-03
-#&gt; g 2.88e-01 1.31e-04 1.78e-01 4.30e-01
+#&gt; parent_0 9.76e+01 1.94e-13 9.02e+01 1.05e+02
+#&gt; k1 4.24e-02 5.92e-03 2.03e-02 8.88e-02
+#&gt; k2 8.24e-04 6.48e-03 3.89e-04 1.75e-03
+#&gt; g 2.88e-01 2.47e-05 1.95e-01 4.03e-01
+#&gt; sigma 5.36e+00 2.22e-05 3.43e+00 7.30e+00
#&gt;
#&gt;
#&gt; DTx values:
@@ -217,7 +219,7 @@
#&gt; DFOP 429 2380 841
#&gt;
#&gt; Representative half-life:
-#&gt; [1] 841.4096</div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>nafta_evaluation</span>)</div><div class='img'><img src='nafta-1.png' alt='' width='700' height='433' /></div></pre>
+#&gt; [1] 841.4094</div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>nafta_evaluation</span>)</div><div class='img'><img src='nafta-1.png' alt='' width='700' height='433' /></div></pre>
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