diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2019-05-03 19:14:15 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2019-05-03 19:14:15 +0200 |
| commit | 1ef7008be2a72a0847064ad9c2ddcfa16b055482 (patch) | |
| tree | ecc3f90e5d18c75aea14ad774aad9214039c0674 /docs/reference/test_data_from_UBA_2014.html | |
| parent | de7b6acdd75a0f95f2a9522c22625810f4aa329a (diff) | |
Improve error model fitting
Now we have a three stage fitting process for
nonconstant error models:
- Unweighted least squares
- Only optimize the error model
- Optimize both
Static documentation rebuilt by pkgdown
Diffstat (limited to 'docs/reference/test_data_from_UBA_2014.html')
| -rw-r--r-- | docs/reference/test_data_from_UBA_2014.html | 34 |
1 files changed, 17 insertions, 17 deletions
diff --git a/docs/reference/test_data_from_UBA_2014.html b/docs/reference/test_data_from_UBA_2014.html index 688baf32..bc988340 100644 --- a/docs/reference/test_data_from_UBA_2014.html +++ b/docs/reference/test_data_from_UBA_2014.html @@ -160,14 +160,14 @@ <span class='no'>m_ws</span> <span class='kw'><-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent_w</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"parent_s"</span>), <span class='kw'>parent_s</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"parent_w"</span>))</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'> <span class='no'>f_river</span> <span class='kw'><-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>m_ws</span>, <span class='no'>test_data_from_UBA_2014</span><span class='kw'>[[</span><span class='fl'>1</span>]]$<span class='no'>data</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#> <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>f_river</span>)</div><div class='img'><img src='test_data_from_UBA_2014-1.png' alt='' width='700' height='433' /></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f_river</span>)$<span class='no'>bpar</span></div><div class='output co'>#> Estimate se_notrans t value Pr(>t) -#> parent_w_0 9.598567e+01 2.12352039 4.520120e+01 9.476357e-18 -#> k_parent_w_sink 3.603743e-01 0.03149366 1.144276e+01 4.128096e-09 -#> k_parent_w_parent_s 6.031371e-02 0.01603582 3.761185e+00 9.436293e-04 -#> k_parent_s_sink 7.560341e-11 0.09483761 7.971881e-10 5.000000e-01 -#> k_parent_s_parent_w 7.419672e-02 0.10738374 6.909493e-01 2.500756e-01 -#> sigma 2.982879e+00 0.50546582 5.901247e+00 1.454824e-05 +#> parent_w_0 9.598567e+01 2.12351789 4.520126e+01 9.476190e-18 +#> k_parent_w_sink 3.603743e-01 0.03149282 1.144306e+01 4.126593e-09 +#> k_parent_w_parent_s 6.031371e-02 0.01603582 3.761186e+00 9.436275e-04 +#> k_parent_s_sink 5.108964e-11 0.09482736 5.387647e-10 5.000000e-01 +#> k_parent_s_parent_w 7.419672e-02 0.10737376 6.910135e-01 2.500560e-01 +#> sigma 2.982879e+00 0.50545649 5.901356e+00 1.454535e-05 #> Lower Upper -#> parent_w_0 91.48420501 100.4871438 +#> parent_w_0 91.48420503 100.4871438 #> k_parent_w_sink 0.30668904 0.4234571 #> k_parent_w_parent_s 0.03423904 0.1062455 #> k_parent_s_sink 0.00000000 Inf @@ -184,25 +184,25 @@ <span class='kw'>M3</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>), <span class='kw'>use_of_ff</span> <span class='kw'>=</span> <span class='st'>"max"</span>)</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'> <span class='no'>f_soil</span> <span class='kw'><-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>m_soil</span>, <span class='no'>test_data_from_UBA_2014</span><span class='kw'>[[</span><span class='fl'>3</span>]]$<span class='no'>data</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#> <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>f_soil</span>, <span class='kw'>lpos</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"bottomright"</span>))</div><div class='img'><img src='test_data_from_UBA_2014-2.png' alt='' width='700' height='433' /></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f_soil</span>)$<span class='no'>bpar</span></div><div class='output co'>#> Estimate se_notrans t value Pr(>t) Lower -#> parent_0 76.55425583 0.859186612 89.1008482 1.113866e-26 74.755959748 -#> k_parent 0.12081956 0.004601921 26.2541551 1.077372e-16 0.111561582 -#> k_M1 0.84258650 0.806231456 1.0450926 1.545475e-01 0.113839804 -#> k_M2 0.04210878 0.017083049 2.4649452 1.170195e-02 0.018013807 +#> parent_0 76.55425584 0.859186619 89.1008474 1.113866e-26 74.755959756 +#> k_parent 0.12081956 0.004601922 26.2541544 1.077373e-16 0.111561582 +#> k_M1 0.84258649 0.806231419 1.0450926 1.545475e-01 0.113839803 +#> k_M2 0.04210878 0.017083049 2.4649453 1.170195e-02 0.018013807 #> k_M3 0.01122919 0.007245890 1.5497322 6.885127e-02 0.002909463 -#> f_parent_to_M1 0.32240199 0.240803564 1.3388589 9.820820e-02 NA -#> f_parent_to_M2 0.16099854 0.033691991 4.7785403 6.531225e-05 NA -#> f_M1_to_M3 0.27921500 0.269443517 1.0362654 1.565440e-01 0.022992933 -#> f_M2_to_M3 0.55641333 0.595125466 0.9349513 1.807725e-01 0.008003317 +#> f_parent_to_M1 0.32240199 0.240803555 1.3388589 9.820820e-02 NA +#> f_parent_to_M2 0.16099854 0.033691991 4.7785403 6.531224e-05 NA +#> f_M1_to_M3 0.27921501 0.269443514 1.0362655 1.565440e-01 0.022992937 +#> f_M2_to_M3 0.55641331 0.595125445 0.9349513 1.807725e-01 0.008003317 #> sigma 1.14005399 0.149696423 7.6157731 1.727024e-07 0.826735778 #> Upper #> parent_0 78.35255192 #> k_parent 0.13084582 -#> k_M1 6.23641283 +#> k_M1 6.23641265 #> k_M2 0.09843279 #> k_M3 0.04333950 #> f_parent_to_M1 NA #> f_parent_to_M2 NA -#> f_M1_to_M3 0.86443084 +#> f_M1_to_M3 0.86443083 #> f_M2_to_M3 0.99489847 #> sigma 1.45337221</div><div class='input'> <span class='fu'><a href='mkinerrmin.html'>mkinerrmin</a></span>(<span class='no'>f_soil</span>)</div><div class='output co'>#> err.min n.optim df #> All data 0.09649963 9 20 |