aboutsummaryrefslogtreecommitdiff
path: root/docs/reference/test_data_from_UBA_2014.html
diff options
context:
space:
mode:
authorJohannes Ranke <jranke@uni-bremen.de>2022-03-02 18:03:54 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-03-02 18:03:54 +0100
commit2bb59c88d49b193f278916ad9cc4de83c0de9604 (patch)
treef286bba254d7c5f2d32eeb2b11f6148938b0e1e1 /docs/reference/test_data_from_UBA_2014.html
parent351248d07f810ccb6c497633a02cd48ee35526e6 (diff)
Make tests more platform independent, update docs
Diffstat (limited to 'docs/reference/test_data_from_UBA_2014.html')
-rw-r--r--docs/reference/test_data_from_UBA_2014.html277
1 files changed, 113 insertions, 164 deletions
diff --git a/docs/reference/test_data_from_UBA_2014.html b/docs/reference/test_data_from_UBA_2014.html
index c0056d45..39b9becb 100644
--- a/docs/reference/test_data_from_UBA_2014.html
+++ b/docs/reference/test_data_from_UBA_2014.html
@@ -1,68 +1,13 @@
-<!-- Generated by pkgdown: do not edit by hand -->
<!DOCTYPE html>
-<html lang="en">
- <head>
- <meta charset="utf-8">
-<meta http-equiv="X-UA-Compatible" content="IE=edge">
-<meta name="viewport" content="width=device-width, initial-scale=1.0">
-
-<title>Three experimental datasets from two water sediment systems and one soil — test_data_from_UBA_2014 • mkin</title>
-
-
-<!-- jquery -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script>
-<!-- Bootstrap -->
-
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous" />
-
-<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script>
-
-<!-- bootstrap-toc -->
-<link rel="stylesheet" href="../bootstrap-toc.css">
-<script src="../bootstrap-toc.js"></script>
-
-<!-- Font Awesome icons -->
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous" />
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous" />
-
-<!-- clipboard.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script>
-
-<!-- headroom.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script>
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
-
-<!-- pkgdown -->
-<link href="../pkgdown.css" rel="stylesheet">
-<script src="../pkgdown.js"></script>
-
-
-
-
-<meta property="og:title" content="Three experimental datasets from two water sediment systems and one soil — test_data_from_UBA_2014" />
-<meta property="og:description" content="The datasets were used for the comparative validation of several kinetic evaluation
- software packages (Ranke, 2014)." />
-
-
-
-
-<!-- mathjax -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script>
-<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script>
-
-<!--[if lt IE 9]>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Three experimental datasets from two water sediment systems and one soil — test_data_from_UBA_2014 • mkin</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Three experimental datasets from two water sediment systems and one soil — test_data_from_UBA_2014"><meta property="og:description" content="The datasets were used for the comparative validation of several kinetic evaluation
+ software packages (Ranke, 2014)."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
-<![endif]-->
-
-
-
- </head>
+<![endif]--></head><body data-spy="scroll" data-target="#toc">
+
- <body data-spy="scroll" data-target="#toc">
<div class="container template-reference-topic">
- <header>
- <div class="navbar navbar-default navbar-fixed-top" role="navigation">
+ <header><div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
@@ -73,13 +18,12 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.3</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.1.0</span>
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
- <ul class="nav navbar-nav">
- <li>
+ <ul class="nav navbar-nav"><li>
<a href="../reference/index.html">Functions and data</a>
</li>
<li class="dropdown">
@@ -88,8 +32,7 @@
<span class="caret"></span>
</a>
- <ul class="dropdown-menu" role="menu">
- <li>
+ <ul class="dropdown-menu" role="menu"><li>
<a href="../articles/mkin.html">Introduction to mkin</a>
</li>
<li>
@@ -99,6 +42,9 @@
<a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
</li>
<li>
+ <a href="../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
+ </li>
+ <li>
<a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
</li>
<li>
@@ -113,30 +59,23 @@
<li>
<a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
</li>
- </ul>
-</li>
+ </ul></li>
<li>
<a href="../news/index.html">News</a>
</li>
- </ul>
- <ul class="nav navbar-nav navbar-right">
- <li>
- <a href="https://github.com/jranke/mkin/">
+ </ul><ul class="nav navbar-nav navbar-right"><li>
+ <a href="https://github.com/jranke/mkin/" class="external-link">
<span class="fab fa-github fa-lg"></span>
</a>
</li>
- </ul>
-
- </div><!--/.nav-collapse -->
+ </ul></div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
- </header>
-
-<div class="row">
+ </header><div class="row">
<div class="col-md-9 contents">
<div class="page-header">
<h1>Three experimental datasets from two water sediment systems and one soil</h1>
@@ -149,113 +88,123 @@
software packages (Ranke, 2014).</p>
</div>
- <pre class="usage"><span class='va'>test_data_from_UBA_2014</span></pre>
+ <div id="ref-usage">
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="va">test_data_from_UBA_2014</span></code></pre></div>
+ </div>
+ <div id="format">
+ <h2>Format</h2>
+ <p>A list containing three datasets as an R6 class defined by <code><a href="mkinds.html">mkinds</a></code>.
+ Each dataset has, among others, the following components</p><dl><dt><code>title</code></dt>
+<dd><p>The name of the dataset, e.g. <code>UBA_2014_WS_river</code></p></dd>
- <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
+ <dt><code>data</code></dt>
+<dd><p>A data frame with the data in the form expected by <code><a href="mkinfit.html">mkinfit</a></code></p></dd>
- <p>A list containing three datasets as an R6 class defined by <code><a href='mkinds.html'>mkinds</a></code>.
- Each dataset has, among others, the following components</p><dl>
- <dt><code>title</code></dt><dd><p>The name of the dataset, e.g. <code>UBA_2014_WS_river</code></p></dd>
- <dt><code>data</code></dt><dd><p>A data frame with the data in the form expected by <code><a href='mkinfit.html'>mkinfit</a></code></p></dd>
-</dl>
-
- <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
-
+</dl></div>
+ <div id="source">
+ <h2>Source</h2>
<p>Ranke (2014) Prüfung und Validierung von Modellierungssoftware als Alternative
zu ModelMaker 4.0, Umweltbundesamt Projektnummer 27452</p>
+ </div>
- <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'> <span class='co'># \dontrun{</span>
- <span class='co'># This is a level P-II evaluation of the dataset according to the FOCUS kinetics</span>
- <span class='co'># guidance. Due to the strong correlation of the parameter estimates, the</span>
- <span class='co'># covariance matrix is not returned. Note that level P-II evaluations are</span>
- <span class='co'># generally considered deprecated due to the frequent occurrence of such</span>
- <span class='co'># large parameter correlations, among other reasons (e.g. the adequacy of the</span>
- <span class='co'># model).</span>
- <span class='va'>m_ws</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span><span class='op'>(</span>parent_w <span class='op'>=</span> <span class='fu'><a href='mkinmod.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"parent_s"</span><span class='op'>)</span>,
- parent_s <span class='op'>=</span> <span class='fu'><a href='mkinmod.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"parent_w"</span><span class='op'>)</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; <span class='message'>Temporary DLL for differentials generated and loaded</span></div><div class='input'> <span class='va'>f_river</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span><span class='op'>(</span><span class='va'>m_ws</span>, <span class='va'>test_data_from_UBA_2014</span><span class='op'>[[</span><span class='fl'>1</span><span class='op'>]</span><span class='op'>]</span><span class='op'>$</span><span class='va'>data</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span><span class='op'>(</span><span class='va'>f_river</span><span class='op'>)</span>
-</div><div class='img'><img src='test_data_from_UBA_2014-1.png' alt='' width='700' height='433' /></div><div class='input'>
- <span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span><span class='op'>(</span><span class='va'>f_river</span><span class='op'>)</span><span class='op'>$</span><span class='va'>bpar</span>
-</div><div class='output co'>#&gt; <span class='warning'>Warning: Could not calculate correlation; no covariance matrix</span></div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t) Lower Upper
-#&gt; parent_w_0 95.91998118 NA NA NA NA NA
-#&gt; k_parent_w 0.41145375 NA NA NA NA NA
-#&gt; k_parent_s 0.04663944 NA NA NA NA NA
-#&gt; f_parent_w_to_parent_s 0.12467894 NA NA NA NA NA
-#&gt; f_parent_s_to_parent_w 0.50000000 NA NA NA NA NA
-#&gt; sigma 3.13612618 NA NA NA NA NA</div><div class='input'> <span class='fu'><a href='mkinerrmin.html'>mkinerrmin</a></span><span class='op'>(</span><span class='va'>f_river</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; err.min n.optim df
-#&gt; All data 0.1090929 5 6
-#&gt; parent_w 0.0817436 3 3
-#&gt; parent_s 0.1619965 2 3</div><div class='input'>
- <span class='co'># This is the evaluation used for the validation of software packages</span>
- <span class='co'># in the expertise from 2014</span>
- <span class='va'>m_soil</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span><span class='op'>(</span>parent <span class='op'>=</span> <span class='fu'><a href='mkinmod.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"M1"</span>, <span class='st'>"M2"</span><span class='op'>)</span><span class='op'>)</span>,
- M1 <span class='op'>=</span> <span class='fu'><a href='mkinmod.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"M3"</span><span class='op'>)</span>,
- M2 <span class='op'>=</span> <span class='fu'><a href='mkinmod.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"M3"</span><span class='op'>)</span>,
- M3 <span class='op'>=</span> <span class='fu'><a href='mkinmod.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span><span class='op'>)</span>,
- use_of_ff <span class='op'>=</span> <span class='st'>"max"</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; <span class='message'>Temporary DLL for differentials generated and loaded</span></div><div class='input'>
- <span class='va'>f_soil</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span><span class='op'>(</span><span class='va'>m_soil</span>, <span class='va'>test_data_from_UBA_2014</span><span class='op'>[[</span><span class='fl'>3</span><span class='op'>]</span><span class='op'>]</span><span class='op'>$</span><span class='va'>data</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span><span class='op'>(</span><span class='va'>f_soil</span>, lpos <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"bottomright"</span><span class='op'>)</span><span class='op'>)</span>
-</div><div class='img'><img src='test_data_from_UBA_2014-2.png' alt='' width='700' height='433' /></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span><span class='op'>(</span><span class='va'>f_soil</span><span class='op'>)</span><span class='op'>$</span><span class='va'>bpar</span>
-</div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t) Lower
-#&gt; parent_0 76.55425650 0.859186399 89.1008710 1.113861e-26 74.755959418
-#&gt; k_parent 0.12081956 0.004601918 26.2541722 1.077359e-16 0.111561575
-#&gt; k_M1 0.84258615 0.806160102 1.0451846 1.545268e-01 0.113779609
-#&gt; k_M2 0.04210880 0.017083034 2.4649483 1.170188e-02 0.018013857
-#&gt; k_M3 0.01122918 0.007245856 1.5497385 6.885052e-02 0.002909431
-#&gt; f_parent_to_M1 0.32240200 0.240783943 1.3389680 9.819076e-02 NA
-#&gt; f_parent_to_M2 0.16099855 0.033691952 4.7785464 6.531136e-05 NA
-#&gt; f_M1_to_M3 0.27921507 0.269423780 1.0363416 1.565267e-01 0.022978205
-#&gt; f_M2_to_M3 0.55641252 0.595119966 0.9349586 1.807707e-01 0.008002509
-#&gt; sigma 1.14005399 0.149696423 7.6157731 1.727024e-07 0.826735778
-#&gt; Upper
-#&gt; parent_0 78.35255358
-#&gt; k_parent 0.13084582
-#&gt; k_M1 6.23970702
-#&gt; k_M2 0.09843260
-#&gt; k_M3 0.04333992
-#&gt; f_parent_to_M1 NA
-#&gt; f_parent_to_M2 NA
-#&gt; f_M1_to_M3 0.86450775
-#&gt; f_M2_to_M3 0.99489895
-#&gt; sigma 1.45337221</div><div class='input'> <span class='fu'><a href='mkinerrmin.html'>mkinerrmin</a></span><span class='op'>(</span><span class='va'>f_soil</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; err.min n.optim df
-#&gt; All data 0.09649963 9 20
-#&gt; parent 0.04721283 2 6
-#&gt; M1 0.26551208 2 5
-#&gt; M2 0.20327575 2 5
-#&gt; M3 0.05196550 3 4</div><div class='input'> <span class='co'># }</span>
-</div></pre>
+ <div id="ref-examples">
+ <h2>Examples</h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"> <span class="co"># \dontrun{</span></span>
+<span class="r-in"> <span class="co"># This is a level P-II evaluation of the dataset according to the FOCUS kinetics</span></span>
+<span class="r-in"> <span class="co"># guidance. Due to the strong correlation of the parameter estimates, the</span></span>
+<span class="r-in"> <span class="co"># covariance matrix is not returned. Note that level P-II evaluations are</span></span>
+<span class="r-in"> <span class="co"># generally considered deprecated due to the frequent occurrence of such</span></span>
+<span class="r-in"> <span class="co"># large parameter correlations, among other reasons (e.g. the adequacy of the</span></span>
+<span class="r-in"> <span class="co"># model).</span></span>
+<span class="r-in"> <span class="va">m_ws</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinmod.html">mkinmod</a></span><span class="op">(</span>parent_w <span class="op">=</span> <span class="fu"><a href="mkinmod.html">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="st">"parent_s"</span><span class="op">)</span>,</span>
+<span class="r-in"> parent_s <span class="op">=</span> <span class="fu"><a href="mkinmod.html">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="st">"parent_w"</span><span class="op">)</span><span class="op">)</span></span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Temporary DLL for differentials generated and loaded</span>
+<span class="r-in"> <span class="va">f_river</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="va">m_ws</span>, <span class="va">test_data_from_UBA_2014</span><span class="op">[[</span><span class="fl">1</span><span class="op">]</span><span class="op">]</span><span class="op">$</span><span class="va">data</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
+<span class="r-in"> <span class="fu"><a href="plot.mkinfit.html">plot_sep</a></span><span class="op">(</span><span class="va">f_river</span><span class="op">)</span></span>
+<span class="r-plt img"><img src="test_data_from_UBA_2014-1.png" alt="" width="700" height="433"></span>
+<span class="r-in"></span>
+<span class="r-in"> <span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">f_river</span><span class="op">)</span><span class="op">$</span><span class="va">bpar</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Estimate se_notrans t value Pr(&gt;t) Lower Upper</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_w_0 95.91998118 NA NA NA NA NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent_w 0.41145375 NA NA NA NA NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent_s 0.04663944 NA NA NA NA NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_w_to_parent_s 0.12467894 NA NA NA NA NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_s_to_parent_w 0.50000000 NA NA NA NA NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 3.13612618 NA NA NA NA NA</span>
+<span class="r-in"> <span class="fu"><a href="mkinerrmin.html">mkinerrmin</a></span><span class="op">(</span><span class="va">f_river</span><span class="op">)</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> err.min n.optim df</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> All data 0.1090929 5 6</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_w 0.0817436 3 3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_s 0.1619965 2 3</span>
+<span class="r-in"></span>
+<span class="r-in"> <span class="co"># This is the evaluation used for the validation of software packages</span></span>
+<span class="r-in"> <span class="co"># in the expertise from 2014</span></span>
+<span class="r-in"> <span class="va">m_soil</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinmod.html">mkinmod</a></span><span class="op">(</span>parent <span class="op">=</span> <span class="fu"><a href="mkinmod.html">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"M1"</span>, <span class="st">"M2"</span><span class="op">)</span><span class="op">)</span>,</span>
+<span class="r-in"> M1 <span class="op">=</span> <span class="fu"><a href="mkinmod.html">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="st">"M3"</span><span class="op">)</span>,</span>
+<span class="r-in"> M2 <span class="op">=</span> <span class="fu"><a href="mkinmod.html">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="st">"M3"</span><span class="op">)</span>,</span>
+<span class="r-in"> M3 <span class="op">=</span> <span class="fu"><a href="mkinmod.html">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span><span class="op">)</span>,</span>
+<span class="r-in"> use_of_ff <span class="op">=</span> <span class="st">"max"</span><span class="op">)</span></span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Temporary DLL for differentials generated and loaded</span>
+<span class="r-in"></span>
+<span class="r-in"> <span class="va">f_soil</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="va">m_soil</span>, <span class="va">test_data_from_UBA_2014</span><span class="op">[[</span><span class="fl">3</span><span class="op">]</span><span class="op">]</span><span class="op">$</span><span class="va">data</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
+<span class="r-in"> <span class="fu"><a href="plot.mkinfit.html">plot_sep</a></span><span class="op">(</span><span class="va">f_soil</span>, lpos <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"topright"</span>, <span class="st">"topright"</span>, <span class="st">"topright"</span>, <span class="st">"bottomright"</span><span class="op">)</span><span class="op">)</span></span>
+<span class="r-plt img"><img src="test_data_from_UBA_2014-2.png" alt="" width="700" height="433"></span>
+<span class="r-in"> <span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">f_soil</span><span class="op">)</span><span class="op">$</span><span class="va">bpar</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Estimate se_notrans t value Pr(&gt;t) Lower</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 76.55425650 0.859186399 89.1008710 1.113861e-26 74.755959418</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent 0.12081956 0.004601918 26.2541722 1.077359e-16 0.111561575</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_M1 0.84258615 0.806160102 1.0451846 1.545268e-01 0.113779609</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_M2 0.04210880 0.017083034 2.4649483 1.170188e-02 0.018013857</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_M3 0.01122918 0.007245856 1.5497385 6.885052e-02 0.002909431</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_M1 0.32240200 0.240783943 1.3389680 9.819076e-02 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_M2 0.16099855 0.033691952 4.7785464 6.531136e-05 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_M1_to_M3 0.27921507 0.269423780 1.0363416 1.565267e-01 0.022978205</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_M2_to_M3 0.55641252 0.595119966 0.9349586 1.807707e-01 0.008002509</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 1.14005399 0.149696423 7.6157731 1.727024e-07 0.826735778</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Upper</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 78.35255358</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent 0.13084582</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_M1 6.23970702</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_M2 0.09843260</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_M3 0.04333992</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_M1 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_M2 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_M1_to_M3 0.86450775</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_M2_to_M3 0.99489895</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 1.45337221</span>
+<span class="r-in"> <span class="fu"><a href="mkinerrmin.html">mkinerrmin</a></span><span class="op">(</span><span class="va">f_soil</span><span class="op">)</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> err.min n.optim df</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> All data 0.09649963 9 20</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent 0.04721283 2 6</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> M1 0.26551208 2 5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> M2 0.20327575 2 5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> M3 0.05196550 3 4</span>
+<span class="r-in"> <span class="co"># }</span></span>
+</code></pre></div>
+ </div>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
- <nav id="toc" data-toggle="toc" class="sticky-top">
- <h2 data-toc-skip>Contents</h2>
- </nav>
- </div>
+ <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2>
+ </nav></div>
</div>
- <footer>
- <div class="copyright">
- <p>Developed by Johannes Ranke.</p>
+ <footer><div class="copyright">
+ <p></p><p>Developed by Johannes Ranke.</p>
</div>
<div class="pkgdown">
- <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
+ <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.2.</p>
</div>
- </footer>
- </div>
+ </footer></div>
- </body>
-</html>
+
+ </body></html>

Contact - Imprint