Add R version to data in benchmark vignette

3 files changed, 33 insertions, 21 deletions

diff --git a/docs/reference/index.html b/docs/reference/index.html
index 4d657918..876207da 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -429,7 +429,7 @@ kinetic models fitted with mkinfit</p></td>
 </div>
 
 <div class="pkgdown">
-  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.3.</p>
+  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.5.</p>
 </div>
 
       </footer></div>
diff --git a/docs/reference/mkinds.html b/docs/reference/mkinds.html
index bef3be93..f43cfed4 100644
--- a/docs/reference/mkinds.html
+++ b/docs/reference/mkinds.html
@@ -93,18 +93,23 @@ provided by this package come as mkinds objects nevertheless.</p>
     </div>
 
     <div id="ref-usage">
-    <div class="sourceCode"><pre class="sourceCode r"><code><span class="co"># S3 method for mkinds</span>
-<span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">x</span>, data <span class="op">=</span> <span class="cn">FALSE</span>, <span class="va">...</span><span class="op">)</span></code></pre></div>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for mkinds</span></span>
+<span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">x</span>, data <span class="op">=</span> <span class="cn">FALSE</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
     </div>
 
     <div id="arguments">
     <h2>Arguments</h2>
     <dl><dt>x</dt>
 <dd><p>An mkinds object.</p></dd>
+
+
 <dt>data</dt>
 <dd><p>Should the data be printed?</p></dd>
+
+
 <dt>...</dt>
 <dd><p>Not used.</p></dd>
+
 </dl></div>
     <div id="public-fields">
     <h2>Public fields</h2>
@@ -151,7 +156,7 @@ and value in order to be compatible with mkinfit</p></dd>
 <h3 id="method-new-">Method <code>new()</code><a class="anchor" aria-label="anchor" href="#method-new-"></a></h3>
 <p>Create a new mkinds object</p><div class="section">
 <h4 id="usage">Usage<a class="anchor" aria-label="anchor" href="#usage"></a></h4>
-<p></p><div class="r"><div class="sourceCode"><pre><code><span class="va"><a href="../reference/mkinds.html">mkinds</a></span><span class="op">$</span><span class="fu">new</span><span class="op">(</span>title <span class="op">=</span> <span class="st">""</span>, <span class="va">data</span>, time_unit <span class="op">=</span> <span class="cn">NA</span>, unit <span class="op">=</span> <span class="cn">NA</span><span class="op">)</span></code></pre></div><p></p></div>
+<p></p><div class="r"><div class="sourceCode"><pre><code><span><span class="va"><a href="../reference/mkinds.html">mkinds</a></span><span class="op">$</span><span class="fu">new</span><span class="op">(</span>title <span class="op">=</span> <span class="st">""</span>, <span class="va">data</span>, time_unit <span class="op">=</span> <span class="cn">NA</span>, unit <span class="op">=</span> <span class="cn">NA</span><span class="op">)</span></span></code></pre></div><p></p></div>
 </div>
 
 <div class="section">
@@ -179,7 +184,7 @@ and value in order to be compatible with mkinfit</p></dd>
 <h3 id="method-clone-">Method <code>clone()</code><a class="anchor" aria-label="anchor" href="#method-clone-"></a></h3>
 <p>The objects of this class are cloneable with this method.</p><div class="section">
 <h4 id="usage-1">Usage<a class="anchor" aria-label="anchor" href="#usage-1"></a></h4>
-<p></p><div class="r"><div class="sourceCode"><pre><code><span class="va">mkinds</span><span class="op">$</span><span class="fu">clone</span><span class="op">(</span>deep <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></code></pre></div><p></p></div>
+<p></p><div class="r"><div class="sourceCode"><pre><code><span><span class="va">mkinds</span><span class="op">$</span><span class="fu">clone</span><span class="op">(</span>deep <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div><p></p></div>
 </div>
 
 <div class="section">
@@ -197,15 +202,15 @@ and value in order to be compatible with mkinfit</p></dd>
 
     <div id="ref-examples">
     <h2>Examples</h2>
-    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"></span>
-<span class="r-in"><span class="va">mds</span> <span class="op">&lt;-</span> <span class="va">mkinds</span><span class="op">$</span><span class="fu">new</span><span class="op">(</span><span class="st">"FOCUS A"</span>, <span class="va">FOCUS_2006_A</span><span class="op">)</span></span>
-<span class="r-in"><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mds</span><span class="op">)</span></span>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="va">mds</span> <span class="op">&lt;-</span> <span class="va">mkinds</span><span class="op">$</span><span class="fu">new</span><span class="op">(</span><span class="st">"FOCUS A"</span>, <span class="va">FOCUS_2006_A</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mds</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkinds&gt; with $title:  FOCUS A </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Observed compounds $observed:  parent </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Sampling times $sampling_times:</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> 0, 3, 7, 14, 30, 62, 90, 118 </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> With a maximum of  1  replicates</span>
-<span class="r-in"></span>
+<span class="r-in"><span></span></span>
 </code></pre></div>
     </div>
   </div>
@@ -220,7 +225,7 @@ and value in order to be compatible with mkinfit</p></dd>
 </div>
 
 <div class="pkgdown">
-  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.3.</p>
+  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.5.</p>
 </div>
 
       </footer></div>
diff --git a/docs/reference/mkindsg.html b/docs/reference/mkindsg.html
index ceee4f37..37ec29bd 100644
--- a/docs/reference/mkindsg.html
+++ b/docs/reference/mkindsg.html
@@ -93,20 +93,27 @@ dataset if no data are supplied.</p>
     </div>
 
     <div id="ref-usage">
-    <div class="sourceCode"><pre class="sourceCode r"><code><span class="co"># S3 method for mkindsg</span>
-<span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">x</span>, data <span class="op">=</span> <span class="cn">FALSE</span>, verbose <span class="op">=</span> <span class="va">data</span>, <span class="va">...</span><span class="op">)</span></code></pre></div>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for mkindsg</span></span>
+<span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">x</span>, data <span class="op">=</span> <span class="cn">FALSE</span>, verbose <span class="op">=</span> <span class="va">data</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
     </div>
 
     <div id="arguments">
     <h2>Arguments</h2>
     <dl><dt>x</dt>
 <dd><p>An mkindsg object.</p></dd>
+
+
 <dt>data</dt>
 <dd><p>Should the mkinds objects be printed with their data?</p></dd>
+
+
 <dt>verbose</dt>
 <dd><p>Should the mkinds objects be printed?</p></dd>
+
+
 <dt>...</dt>
 <dd><p>Not used.</p></dd>
+
 </dl></div>
     <div id="public-fields">
     <h2>Public fields</h2>
@@ -148,7 +155,7 @@ or covariates like soil pH).</p></dd>
 <h3 id="method-new-">Method <code>new()</code><a class="anchor" aria-label="anchor" href="#method-new-"></a></h3>
 <p>Create a new mkindsg object</p><div class="section">
 <h4 id="usage">Usage<a class="anchor" aria-label="anchor" href="#usage"></a></h4>
-<p></p><div class="r"><div class="sourceCode"><pre><code><span class="va"><a href="../reference/mkindsg.html">mkindsg</a></span><span class="op">$</span><span class="fu">new</span><span class="op">(</span>title <span class="op">=</span> <span class="st">""</span>, <span class="va">ds</span>, f_time_norm <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fu"><a href="https://rdrr.io/r/base/length.html" class="external-link">length</a></span><span class="op">(</span><span class="va">ds</span><span class="op">)</span><span class="op">)</span>, <span class="va">meta</span><span class="op">)</span></code></pre></div><p></p></div>
+<p></p><div class="r"><div class="sourceCode"><pre><code><span><span class="va"><a href="../reference/mkindsg.html">mkindsg</a></span><span class="op">$</span><span class="fu">new</span><span class="op">(</span>title <span class="op">=</span> <span class="st">""</span>, <span class="va">ds</span>, f_time_norm <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fu"><a href="https://rdrr.io/r/base/length.html" class="external-link">length</a></span><span class="op">(</span><span class="va">ds</span><span class="op">)</span><span class="op">)</span>, <span class="va">meta</span><span class="op">)</span></span></code></pre></div><p></p></div>
 </div>
 
 <div class="section">
@@ -176,7 +183,7 @@ or covariates like soil pH).</p></dd>
 <h3 id="method-clone-">Method <code>clone()</code><a class="anchor" aria-label="anchor" href="#method-clone-"></a></h3>
 <p>The objects of this class are cloneable with this method.</p><div class="section">
 <h4 id="usage-1">Usage<a class="anchor" aria-label="anchor" href="#usage-1"></a></h4>
-<p></p><div class="r"><div class="sourceCode"><pre><code><span class="va">mkindsg</span><span class="op">$</span><span class="fu">clone</span><span class="op">(</span>deep <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></code></pre></div><p></p></div>
+<p></p><div class="r"><div class="sourceCode"><pre><code><span><span class="va">mkindsg</span><span class="op">$</span><span class="fu">clone</span><span class="op">(</span>deep <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div><p></p></div>
 </div>
 
 <div class="section">
@@ -194,15 +201,15 @@ or covariates like soil pH).</p></dd>
 
     <div id="ref-examples">
     <h2>Examples</h2>
-    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"></span>
-<span class="r-in"><span class="va">mdsg</span> <span class="op">&lt;-</span> <span class="va">mkindsg</span><span class="op">$</span><span class="fu">new</span><span class="op">(</span><span class="st">"Experimental X"</span>, <span class="va">experimental_data_for_UBA_2019</span><span class="op">[</span><span class="fl">6</span><span class="op">:</span><span class="fl">10</span><span class="op">]</span><span class="op">)</span></span>
-<span class="r-in"><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mdsg</span><span class="op">)</span></span>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="va">mdsg</span> <span class="op">&lt;-</span> <span class="va">mkindsg</span><span class="op">$</span><span class="fu">new</span><span class="op">(</span><span class="st">"Experimental X"</span>, <span class="va">experimental_data_for_UBA_2019</span><span class="op">[</span><span class="fl">6</span><span class="op">:</span><span class="fl">10</span><span class="op">]</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mdsg</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkindsg&gt; holding 5 mkinds objects</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Title $title:  Experimental X </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Occurrence of observed compounds $observed_n:</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> parent     A1 </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>      5      5 </span>
-<span class="r-in"><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mdsg</span>, verbose <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mdsg</span>, verbose <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkindsg&gt; holding 5 mkinds objects</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Title $title:  Experimental X </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Occurrence of observed compounds $observed_n:</span>
@@ -249,7 +256,7 @@ or covariates like soil pH).</p></dd>
 <span class="r-out co"><span class="r-pr">#&gt;</span> With a maximum of  2  replicates</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Time unit:  days </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Observation unit:  \%AR </span>
-<span class="r-in"><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mdsg</span>, verbose <span class="op">=</span> <span class="cn">TRUE</span>, data <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mdsg</span>, verbose <span class="op">=</span> <span class="cn">TRUE</span>, data <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkindsg&gt; holding 5 mkinds objects</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Title $title:  Experimental X </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> Occurrence of observed compounds $observed_n:</span>
@@ -391,7 +398,7 @@ or covariates like soil pH).</p></dd>
 <span class="r-out co"><span class="r-pr">#&gt;</span> 14   91   46.7 13.2</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> 15  120   42.1 14.3</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> 16  120   41.3 12.1</span>
-<span class="r-in"></span>
+<span class="r-in"><span></span></span>
 </code></pre></div>
     </div>
   </div>
@@ -406,7 +413,7 @@ or covariates like soil pH).</p></dd>
 </div>
 
 <div class="pkgdown">
-  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.3.</p>
+  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.5.</p>
 </div>
 
       </footer></div>