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author | Johannes Ranke <jranke@uni-bremen.de> | 2021-07-27 15:44:39 +0200 |
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committer | Johannes Ranke <jranke@uni-bremen.de> | 2021-07-27 15:44:39 +0200 |
commit | 6bc7a6d3e4a849a4b4da49979c577646a541989e (patch) | |
tree | b5b49147e85692342727a2d8203fbb310a4eb0bb /docs/reference | |
parent | 25648577b6d5a4521da7c9d2eb174d292d2d85af (diff) |
Publication date for 1.0.4 in NEWS, update docs
Diffstat (limited to 'docs/reference')
-rw-r--r-- | docs/reference/Rplot001.png | bin | 27637 -> 27644 bytes | |||
-rw-r--r-- | docs/reference/Rplot002.png | bin | 59394 -> 59381 bytes | |||
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-rw-r--r-- | docs/reference/mixed-1.png | bin | 219876 -> 220057 bytes | |||
-rw-r--r-- | docs/reference/mkinmod.html | 4 | ||||
-rw-r--r-- | docs/reference/mmkin-1.png | bin | 110844 -> 111120 bytes | |||
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-rw-r--r-- | docs/reference/mmkin.html | 4 | ||||
-rw-r--r-- | docs/reference/nlme-1.png | bin | 70244 -> 68943 bytes | |||
-rw-r--r-- | docs/reference/nlme-2.png | bin | 94239 -> 94409 bytes | |||
-rw-r--r-- | docs/reference/nlme.mmkin-1.png | bin | 124827 -> 124937 bytes | |||
-rw-r--r-- | docs/reference/nlme.mmkin-2.png | bin | 169698 -> 169884 bytes | |||
-rw-r--r-- | docs/reference/nlme.mmkin-3.png | bin | 172809 -> 172866 bytes | |||
-rw-r--r-- | docs/reference/plot.mixed.mmkin-1.png | bin | 84976 -> 85300 bytes | |||
-rw-r--r-- | docs/reference/plot.mixed.mmkin-2.png | bin | 174061 -> 174113 bytes |
21 files changed, 4 insertions, 4 deletions
diff --git a/docs/reference/Rplot001.png b/docs/reference/Rplot001.png Binary files differindex 49fb9af1..22eb54d3 100644 --- a/docs/reference/Rplot001.png +++ b/docs/reference/Rplot001.png diff --git a/docs/reference/Rplot002.png b/docs/reference/Rplot002.png Binary files differindex 745d583d..8512d4f8 100644 --- a/docs/reference/Rplot002.png +++ b/docs/reference/Rplot002.png diff --git a/docs/reference/Rplot003.png b/docs/reference/Rplot003.png Binary files differindex eba202e9..da0a093b 100644 --- a/docs/reference/Rplot003.png +++ b/docs/reference/Rplot003.png diff --git a/docs/reference/Rplot004.png b/docs/reference/Rplot004.png Binary files differindex a4f878c8..31771c20 100644 --- a/docs/reference/Rplot004.png +++ b/docs/reference/Rplot004.png diff --git a/docs/reference/Rplot005.png b/docs/reference/Rplot005.png Binary files differindex a4f878c8..31771c20 100644 --- a/docs/reference/Rplot005.png +++ b/docs/reference/Rplot005.png diff --git a/docs/reference/Rplot006.png b/docs/reference/Rplot006.png Binary files differindex ff8a5d83..4c728f4e 100644 --- a/docs/reference/Rplot006.png +++ b/docs/reference/Rplot006.png diff --git a/docs/reference/mixed-1.png b/docs/reference/mixed-1.png Binary files differindex b9454c86..422ab6a0 100644 --- a/docs/reference/mixed-1.png +++ b/docs/reference/mixed-1.png diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html index 1e8ad60d..441e573e 100644 --- a/docs/reference/mkinmod.html +++ b/docs/reference/mkinmod.html @@ -348,7 +348,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media</p> parent <span class='op'>=</span> <span class='fu'>mkinsub</span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"m1"</span>, full_name <span class='op'>=</span> <span class='st'>"Test compound"</span><span class='op'>)</span>, m1 <span class='op'>=</span> <span class='fu'>mkinsub</span><span class='op'>(</span><span class='st'>"SFO"</span>, full_name <span class='op'>=</span> <span class='st'>"Metabolite M1"</span><span class='op'>)</span>, name <span class='op'>=</span> <span class='st'>"SFO_SFO"</span>, dll_dir <span class='op'>=</span> <span class='va'>DLL_dir</span>, unload <span class='op'>=</span> <span class='cn'>TRUE</span>, overwrite <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span> -</div><div class='output co'>#> <span class='message'>Copied DLL from /tmp/Rtmp17EVw2/file269cfd5cc541a9.so to /home/jranke/.local/share/mkin/SFO_SFO.so</span></div><div class='input'><span class='co'># Now we can save the model and restore it in a new session</span> +</div><div class='output co'>#> <span class='message'>Copied DLL from /tmp/RtmpkoTT3P/filecc29e29e1b974.so to /home/jranke/.local/share/mkin/SFO_SFO.so</span></div><div class='input'><span class='co'># Now we can save the model and restore it in a new session</span> <span class='fu'><a href='https://rdrr.io/r/base/readRDS.html'>saveRDS</a></span><span class='op'>(</span><span class='va'>SFO_SFO.2</span>, file <span class='op'>=</span> <span class='st'>"~/SFO_SFO.rds"</span><span class='op'>)</span> <span class='co'># Terminate the R session here if you would like to check, and then do</span> <span class='kw'><a href='https://rdrr.io/r/base/library.html'>library</a></span><span class='op'>(</span><span class='va'><a href='https://pkgdown.jrwb.de/mkin/'>mkin</a></span><span class='op'>)</span> @@ -397,7 +397,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media</p> #> }) #> return(predicted) #> } -#> <environment: 0x55555c17ae90></div><div class='input'> +#> <environment: 0x55555a57f6c8></div><div class='input'> <span class='co'># If we have several parallel metabolites</span> <span class='co'># (compare tests/testthat/test_synthetic_data_for_UBA_2014.R)</span> <span class='va'>m_synth_DFOP_par</span> <span class='op'><-</span> <span class='fu'>mkinmod</span><span class='op'>(</span> diff --git a/docs/reference/mmkin-1.png b/docs/reference/mmkin-1.png Binary files differindex f6bb2131..701a6d6a 100644 --- a/docs/reference/mmkin-1.png +++ b/docs/reference/mmkin-1.png diff --git a/docs/reference/mmkin-2.png b/docs/reference/mmkin-2.png Binary files differindex 50102a3d..5277b389 100644 --- a/docs/reference/mmkin-2.png +++ b/docs/reference/mmkin-2.png diff --git a/docs/reference/mmkin-3.png b/docs/reference/mmkin-3.png Binary files differindex 9aa7f0db..2659cd61 100644 --- a/docs/reference/mmkin-3.png +++ b/docs/reference/mmkin-3.png diff --git a/docs/reference/mmkin-4.png b/docs/reference/mmkin-4.png Binary files differindex f4f413d1..ae16ee79 100644 --- a/docs/reference/mmkin-4.png +++ b/docs/reference/mmkin-4.png diff --git a/docs/reference/mmkin-5.png b/docs/reference/mmkin-5.png Binary files differindex 48ab2c50..2b9dc831 100644 --- a/docs/reference/mmkin-5.png +++ b/docs/reference/mmkin-5.png diff --git a/docs/reference/mmkin.html b/docs/reference/mmkin.html index caba300e..d7989c6b 100644 --- a/docs/reference/mmkin.html +++ b/docs/reference/mmkin.html @@ -235,9 +235,9 @@ plotting.</p></div> <span class='va'>time_default</span> </div><div class='output co'>#> user system elapsed -#> 4.656 0.403 1.734 </div><div class='input'><span class='va'>time_1</span> +#> 4.491 0.397 1.634 </div><div class='input'><span class='va'>time_1</span> </div><div class='output co'>#> user system elapsed -#> 5.627 0.004 5.631 </div><div class='input'> +#> 5.491 0.000 5.492 </div><div class='input'> <span class='fu'><a href='endpoints.html'>endpoints</a></span><span class='op'>(</span><span class='va'>fits.0</span><span class='op'>[[</span><span class='st'>"SFO_lin"</span>, <span class='fl'>2</span><span class='op'>]</span><span class='op'>]</span><span class='op'>)</span> </div><div class='output co'>#> $ff #> parent_M1 parent_sink M1_M2 M1_sink diff --git a/docs/reference/nlme-1.png b/docs/reference/nlme-1.png Binary files differindex c41adc27..365aaef0 100644 --- 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