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| author | Johannes Ranke <jranke@uni-bremen.de> | 2020-05-14 17:10:59 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2020-05-14 17:10:59 +0200 |
| commit | b6e278759127dab5bb78bc3016926a66e8a9758f (patch) | |
| tree | 0dc20ce2fa58805b736d77035dbff40667272fff /docs/reference | |
| parent | 218a9c55bd80fb708b15fa7196422f759bfe4b27 (diff) | |
Test markdown link, article update due to .rmd extension
Diffstat (limited to 'docs/reference')
| -rw-r--r-- | docs/reference/nlme-1.png | bin | 71651 -> 70555 bytes | |||
| -rw-r--r-- | docs/reference/nlme.html | 25 |
2 files changed, 14 insertions, 11 deletions
diff --git a/docs/reference/nlme-1.png b/docs/reference/nlme-1.png Binary files differindex 8db1f999..68ccb43f 100644 --- a/docs/reference/nlme-1.png +++ b/docs/reference/nlme-1.png diff --git a/docs/reference/nlme.html b/docs/reference/nlme.html index 8ef7e7c9..b2d415dc 100644 --- a/docs/reference/nlme.html +++ b/docs/reference/nlme.html @@ -43,7 +43,7 @@ <meta property="og:description" content="These functions facilitate setting up a nonlinear mixed effects model for an mmkin row object. An mmkin row object is essentially a list of mkinfit objects that have been obtained by fitting the same model to a list of -datasets." /> +datasets. They are used internally by the nlme.mmkin() method." /> @@ -112,6 +112,9 @@ datasets." /> <li> <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a> </li> + <li> + <a href="../articles/web_only/benchmarks.html">Some benchmark timings</a> + </li> </ul> </li> <li> @@ -147,7 +150,7 @@ datasets." /> <p>These functions facilitate setting up a nonlinear mixed effects model for an mmkin row object. An mmkin row object is essentially a list of mkinfit objects that have been obtained by fitting the same model to a list of -datasets.</p> +datasets. They are used internally by the <code><a href='nlme.mmkin.html'>nlme.mmkin()</a></code> method.</p> </div> <pre class="usage"><span class='fu'>nlme_function</span>(<span class='no'>object</span>) @@ -222,28 +225,28 @@ nlme for the case of a single grouping variable ds?</p> #> Model: value ~ nlme_f(name, time, parent_0, log_k_parent_sink) #> Data: grouped_data #> AIC BIC logLik -#> 252.7798 262.1358 -121.3899 +#> 298.2781 307.7372 -144.1391 #> #> Random effects: #> Formula: list(parent_0 ~ 1, log_k_parent_sink ~ 1) #> Level: ds #> Structure: Diagonal -#> parent_0 log_k_parent_sink Residual -#> StdDev: 0.0006768135 0.6800777 2.489397 +#> parent_0 log_k_parent_sink Residual +#> StdDev: 0.9374733 0.7098105 3.83543 #> #> Fixed effects: parent_0 + log_k_parent_sink ~ 1 -#> Value Std.Error DF t-value p-value -#> parent_0 101.74884 0.6456014 44 157.60321 0 -#> log_k_parent_sink -3.05575 0.4015811 44 -7.60929 0 +#> Value Std.Error DF t-value p-value +#> parent_0 101.76838 1.1445444 45 88.91606 0 +#> log_k_parent_sink -3.05444 0.4195622 45 -7.28008 0 #> Correlation: #> prnt_0 -#> log_k_parent_sink 0.026 +#> log_k_parent_sink 0.034 #> #> Standardized Within-Group Residuals: #> Min Q1 Med Q3 Max -#> -2.1317488 -0.6878121 0.0828385 0.8592270 2.9529864 +#> -2.6169360 -0.2185329 0.0574070 0.5720937 3.0459868 #> -#> Number of Observations: 48 +#> Number of Observations: 49 #> Number of Groups: 3 </div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='fu'><a href='https://rdrr.io/pkg/nlme/man/augPred.html'>augPred</a></span>(<span class='no'>m_nlme</span>, <span class='kw'>level</span> <span class='kw'>=</span> <span class='fl'>0</span>:<span class='fl'>1</span>), <span class='kw'>layout</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>3</span>, <span class='fl'>1</span>))</div><div class='img'><img src='nlme-1.png' alt='' width='700' height='433' /></div><div class='input'># augPred does not seem to work on fits with more than one state # variable |
