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| author | Johannes Ranke <jranke@uni-bremen.de> | 2015-11-09 09:05:15 +0100 |
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| committer | Johannes Ranke <jranke@uni-bremen.de> | 2015-11-09 09:05:15 +0100 |
| commit | 3151647526f299686b68420a83ae38cd7f3d08f5 (patch) | |
| tree | c061b5a23ac6cc5644c6851012105b185715ef5e /inst/web/mkinresplot.html | |
| parent | 415ca2bea5d5c3815bd9f8fa1566cec5bb3fc775 (diff) | |
Rebuild vignettes and static documentation
Diffstat (limited to 'inst/web/mkinresplot.html')
| -rw-r--r-- | inst/web/mkinresplot.html | 158 |
1 files changed, 158 insertions, 0 deletions
diff --git a/inst/web/mkinresplot.html b/inst/web/mkinresplot.html new file mode 100644 index 00000000..579c047e --- /dev/null +++ b/inst/web/mkinresplot.html @@ -0,0 +1,158 @@ +<!DOCTYPE html> +<html lang="en"> + <head> + <meta charset="utf-8"> +<title>mkinresplot. mkin 0.9-41</title> +<meta name="viewport" content="width=device-width, initial-scale=1.0"> +<meta name="author" content=" + Johannes Ranke +"> + +<link href="css/bootstrap.css" rel="stylesheet"> +<link href="css/bootstrap-responsive.css" rel="stylesheet"> +<link href="css/highlight.css" rel="stylesheet"> +<link href="css/staticdocs.css" rel="stylesheet"> + +<!--[if lt IE 9]> + <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> +<![endif]--> + +<script type="text/x-mathjax-config"> + MathJax.Hub.Config({ + tex2jax: { + inlineMath: [ ['$','$'], ["\\(","\\)"] ], + processEscapes: true + } + }); +</script> +<script type="text/javascript" + src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> +</script> + </head> + + <body> + <div class="navbar"> + <div class="navbar-inner"> + <div class="container"> + <a class="brand" href="#">mkin 0.9-41</a> + <div class="nav"> + <ul class="nav"> + <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> + </ul> + </div> + </div> + </div> +</div> + + <div class="container"> + <header> + + </header> + + <h1> + Function to plot residuals stored in an mkin object +</h1> + +<div class="row"> + <div class="span8"> + <h2>Usage</h2> + <pre><div>mkinresplot(object, obs_vars = names(object$mkinmod$map), xlim = c(0, 1.1 * max(object$data$time)), xlab = "Time", ylab = "Residual", maxabs = "auto", legend = TRUE, lpos = "topright", ...)</div></pre> + + <h2>Arguments</h2> + <dl> + <dt>object</dt> + <dd> + A fit represented in an <code><a href='mkinfit.html'>mkinfit</a></code> object. +</dd> + <dt>obs_vars</dt> + <dd> + A character vector of names of the observed variables for which residuals + should be plotted. Defaults to all observed variables in the model +</dd> + <dt>xlim</dt> + <dd> + plot range in x direction. + </dd> + <dt>xlab</dt> + <dd> + Label for the x axis. Defaults to "Time [days]". +</dd> + <dt>ylab</dt> + <dd> + Label for the y axis. Defaults to "Residual [% of applied radioactivity]". +</dd> + <dt>maxabs</dt> + <dd> + Maximum absolute value of the residuals. This is used for the scaling of + the y axis and defaults to "auto". +</dd> + <dt>legend</dt> + <dd> + Should a legend be plotted? Defaults to "TRUE". +</dd> + <dt>lpos</dt> + <dd> + Where should the legend be placed? Default is "topright". Will be passed on to + <code><a href='http://www.inside-r.org/r-doc/graphics/legend'>legend</a></code>. </dd> + <dt>...</dt> + <dd> + further arguments passed to <code><a href='http://www.inside-r.org/r-doc/graphics/plot'>plot</a></code>. +</dd> + </dl> + + <div class="Description"> + <h2>Description</h2> + + <p>This function plots the residuals for the specified subset of the + observed variables from an mkinfit object. A combined plot of the fitted + model and the residuals can be obtained using <code><a href='plot.mkinfit.html'>plot.mkinfit</a></code> + using the argument <code>show_residuals = TRUE</code>.</p> + + </div> + + <div class="Value"> + <h2>Value</h2> + + <p><dl> + Nothing is returned by this function, as it is called for its side effect, namely to produce a plot. +</dl></p> + + </div> + + <h2 id="examples">Examples</h2> + <pre class="examples"><div class='input'>model <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO")) +</div> +<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong> +<div class='input'>fit <- mkinfit(model, FOCUS_2006_D, quiet = TRUE) +mkinresplot(fit, "m1") +</div> +<p><img src='mkinresplot-4.png' alt='' width='540' height='400' /></p></pre> + </div> + <div class="span4"> + <!-- <ul> + <li>mkinresplot</li> + </ul> + <ul> + <li> hplot </li> + </ul> --> + + <h2>See also</h2> + + <code><a href='mkinplot.html'>mkinplot</a></code>, for a way to plot the data and the fitted lines of the + mkinfit object. + + <h2>Author</h2> + + Johannes Ranke + + + </div> +</div> + + <footer> + <p class="pull-right"><a href="#">Back to top</a></p> +<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p> + </footer> + </div> + </body> +</html>
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