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| author | Johannes Ranke <jranke@uni-bremen.de> | 2015-11-09 09:05:15 +0100 |
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| committer | Johannes Ranke <jranke@uni-bremen.de> | 2015-11-09 09:05:15 +0100 |
| commit | 3151647526f299686b68420a83ae38cd7f3d08f5 (patch) | |
| tree | c061b5a23ac6cc5644c6851012105b185715ef5e /inst/web/mmkin.html | |
| parent | 415ca2bea5d5c3815bd9f8fa1566cec5bb3fc775 (diff) | |
Rebuild vignettes and static documentation
Diffstat (limited to 'inst/web/mmkin.html')
| -rw-r--r-- | inst/web/mmkin.html | 158 |
1 files changed, 158 insertions, 0 deletions
diff --git a/inst/web/mmkin.html b/inst/web/mmkin.html new file mode 100644 index 00000000..e09e6859 --- /dev/null +++ b/inst/web/mmkin.html @@ -0,0 +1,158 @@ +<!DOCTYPE html> +<html lang="en"> + <head> + <meta charset="utf-8"> +<title>mmkin. mkin 0.9-41</title> +<meta name="viewport" content="width=device-width, initial-scale=1.0"> +<meta name="author" content=" + Johannes Ranke +"> + +<link href="css/bootstrap.css" rel="stylesheet"> +<link href="css/bootstrap-responsive.css" rel="stylesheet"> +<link href="css/highlight.css" rel="stylesheet"> +<link href="css/staticdocs.css" rel="stylesheet"> + +<!--[if lt IE 9]> + <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> +<![endif]--> + +<script type="text/x-mathjax-config"> + MathJax.Hub.Config({ + tex2jax: { + inlineMath: [ ['$','$'], ["\\(","\\)"] ], + processEscapes: true + } + }); +</script> +<script type="text/javascript" + src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> +</script> + </head> + + <body> + <div class="navbar"> + <div class="navbar-inner"> + <div class="container"> + <a class="brand" href="#">mkin 0.9-41</a> + <div class="nav"> + <ul class="nav"> + <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> + </ul> + </div> + </div> + </div> +</div> + + <div class="container"> + <header> + + </header> + + <h1> + Fit one or more kinetic models with one or more state variables to one or more datasets +</h1> + +<div class="row"> + <div class="span8"> + <h2>Usage</h2> + <pre><div>mmkin(models, datasets, cores = round(detectCores()/2), cluster = NULL, ...)</div></pre> + + <h2>Arguments</h2> + <dl> + <dt>models</dt> + <dd> + Either a character vector of shorthand names ("SFO", "FOMC", "DFOP", + "HS", "SFORB"), or an optionally named list of <code><a href='mkinmod.html'>mkinmod</a></code> + objects. + </dd> + <dt>datasets</dt> + <dd> + An optionally named list of datasets suitable as observed data for + <code><a href='mkinfit.html'>mkinfit</a></code>. + </dd> + <dt>cores</dt> + <dd> + The number of cores to be used for multicore processing. This is only + used when the <code>cluster</code> argument is <code>NULL</code>. + </dd> + <dt>cluster</dt> + <dd> + A cluster as returned by <code><a href='http://www.inside-r.org/r-doc/parallel/makeCluster'>makeCluster</a></code> to be used for parallel + execution. + </dd> + <dt>...</dt> + <dd> + Further arguments that will be passed to <code><a href='mkinfit.html'>mkinfit</a></code>. + </dd> + </dl> + + <div class="Description"> + <h2>Description</h2> + + <p>This function calls <code><a href='mkinfit.html'>mkinfit</a></code> on all combinations of models and datasets + specified in its first two arguments.</p> + + </div> + + <div class="Value"> + <h2>Value</h2> + + <p><dl> + A matrix of <code><a href='mkinfit.html'>mkinfit</a></code> objects that can be indexed using the model + and dataset names as row and column indices. +</dl></p> + + </div> + + <h2 id="examples">Examples</h2> + <pre class="examples"><div class='input'>## Not run: +# m_synth_SFO_lin <- mkinmod(parent = list(type = "SFO", to = "M1"), +# M1 = list(type = "SFO", to = "M2"), +# M2 = list(type = "SFO"), use_of_ff = "max") +# +# m_synth_FOMC_lin <- mkinmod(parent = list(type = "FOMC", to = "M1"), +# M1 = list(type = "SFO", to = "M2"), +# M2 = list(type = "SFO"), use_of_ff = "max") +# +# models <- list(SFO_lin = m_synth_SFO_lin, FOMC_lin = m_synth_FOMC_lin) +# datasets <- lapply(synthetic_data_for_UBA_2014[1:3], function(x) x$data) +# +# time_default <- system.time(fits <- mmkin(models, datasets)) +# time_1 <- system.time(fits.1 <- mmkin(models, datasets, cores = 1)) +# +# time_default +# time_1 +# +# endpoints(fits[["SFO_lin", 2]]) +# ## End(Not run) +</div></pre> + </div> + <div class="span4"> + <!-- <ul> + <li>mmkin</li> + </ul> + <ul> + <li> optimize </li> + </ul> --> + + <h2>See also</h2> + + <code><a href='Extract.mmkin.html'>[.mmkin</a></code> for subsetting, <code><a href='plot.mmkin.html'>plot.mmkin</a></code> for plotting. + + + <h2>Author</h2> + + Johannes Ranke + + + </div> +</div> + + <footer> + <p class="pull-right"><a href="#">Back to top</a></p> +<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p> + </footer> + </div> + </body> +</html>
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