diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2016-03-24 07:26:55 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2016-03-24 08:28:23 +0100 |
| commit | d432a48c8e7cc2df95d4952af415f18809f60409 (patch) | |
| tree | d55d27b5dc1cf393b532344db6d3764ed1e6b207 /inst/web | |
| parent | a04cc65a18998ff5d107a52d23c9a4aad21a03aa (diff) | |
Address feedback from CRAN submission
- Put the CRAN URL that the badge points to into canonical form. I had
missed the requirement to use the canonical form before, as the R CMD
check message complained about a (possibily) invalid URL, so I
overlooked the explanation later in the check log. Thanks to Uwe for
his patience. Fix checked with winbuilder.
- Slightly reduced the build time for the compiled_models vignette by
skipping the warm-up. 3 repetitions are necessary for the autoplot
method to work
Diffstat (limited to 'inst/web')
36 files changed, 104 insertions, 104 deletions
diff --git a/inst/web/DFOP.solution.html b/inst/web/DFOP.solution.html index fb73ffb8..4746beef 100644 --- a/inst/web/DFOP.solution.html +++ b/inst/web/DFOP.solution.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>DFOP.solution. mkin 0.9.42</title> +<title>DFOP.solution. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/Extract.mmkin.html b/inst/web/Extract.mmkin.html index fd99aa8b..2d77f552 100644 --- a/inst/web/Extract.mmkin.html +++ b/inst/web/Extract.mmkin.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>[.mmkin. mkin 0.9.42</title> +<title>[.mmkin. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> @@ -181,7 +181,7 @@ $calls $time user system elapsed - 0.288 0.000 0.288 + 0.276 0.000 0.273 $mkinmod <mkinmod> model generated with @@ -367,7 +367,7 @@ function (P) } return(mC) } -<environment: 0x23d9ae8> +<environment: 0x2b9db08> $cost_notrans function (P) @@ -389,7 +389,7 @@ function (P) scaleVar = scaleVar) return(mC) } -<environment: 0x23d9ae8> +<environment: 0x2b9db08> $hessian_notrans parent_0 alpha beta @@ -455,7 +455,7 @@ $bparms.state 99.66619 $date -[1] "Wed Mar 23 18:10:37 2016" +[1] "Thu Mar 24 08:26:19 2016" attr(,"class") [1] "mkinfit" "modFit" @@ -540,7 +540,7 @@ $calls $time user system elapsed - 0.092 0.004 0.096 + 0.088 0.004 0.090 $mkinmod <mkinmod> model generated with @@ -727,7 +727,7 @@ function (P) } return(mC) } -<environment: 0x4023b58> +<environment: 0x47e8398> $cost_notrans function (P) @@ -749,7 +749,7 @@ function (P) scaleVar = scaleVar) return(mC) } -<environment: 0x4023b58> +<environment: 0x47e8398> $hessian_notrans parent_0 k_parent_sink @@ -812,7 +812,7 @@ $bparms.state 99.17407 $date -[1] "Wed Mar 23 18:10:36 2016" +[1] "Thu Mar 24 08:26:19 2016" attr(,"class") [1] "mkinfit" "modFit" @@ -890,7 +890,7 @@ $calls $time user system elapsed - 0.092 0.004 0.096 + 0.088 0.004 0.090 $mkinmod <mkinmod> model generated with @@ -1077,7 +1077,7 @@ function (P) } return(mC) } -<environment: 0x4023b58> +<environment: 0x47e8398> $cost_notrans function (P) @@ -1099,7 +1099,7 @@ function (P) scaleVar = scaleVar) return(mC) } -<environment: 0x4023b58> +<environment: 0x47e8398> $hessian_notrans parent_0 k_parent_sink @@ -1162,7 +1162,7 @@ $bparms.state 99.17407 $date -[1] "Wed Mar 23 18:10:36 2016" +[1] "Thu Mar 24 08:26:19 2016" attr(,"class") [1] "mkinfit" "modFit" diff --git a/inst/web/FOCUS_2006_DFOP_ref_A_to_B.html b/inst/web/FOCUS_2006_DFOP_ref_A_to_B.html index 76911ba7..e5dad993 100644 --- a/inst/web/FOCUS_2006_DFOP_ref_A_to_B.html +++ b/inst/web/FOCUS_2006_DFOP_ref_A_to_B.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>FOCUS_2006_DFOP_ref_A_to_B. mkin 0.9.42</title> +<title>FOCUS_2006_DFOP_ref_A_to_B. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/FOCUS_2006_FOMC_ref_A_to_F.html b/inst/web/FOCUS_2006_FOMC_ref_A_to_F.html index ac250110..ce238c92 100644 --- a/inst/web/FOCUS_2006_FOMC_ref_A_to_F.html +++ b/inst/web/FOCUS_2006_FOMC_ref_A_to_F.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>FOCUS_2006_FOMC_ref_A_to_F. mkin 0.9.42</title> +<title>FOCUS_2006_FOMC_ref_A_to_F. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/FOCUS_2006_HS_ref_A_to_F.html b/inst/web/FOCUS_2006_HS_ref_A_to_F.html index e7f5cdd5..a1abc1b6 100644 --- a/inst/web/FOCUS_2006_HS_ref_A_to_F.html +++ b/inst/web/FOCUS_2006_HS_ref_A_to_F.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>FOCUS_2006_HS_ref_A_to_F. mkin 0.9.42</title> +<title>FOCUS_2006_HS_ref_A_to_F. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/FOCUS_2006_SFO_ref_A_to_F.html b/inst/web/FOCUS_2006_SFO_ref_A_to_F.html index 5bbdaa24..badb4c41 100644 --- a/inst/web/FOCUS_2006_SFO_ref_A_to_F.html +++ b/inst/web/FOCUS_2006_SFO_ref_A_to_F.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>FOCUS_2006_SFO_ref_A_to_F. mkin 0.9.42</title> +<title>FOCUS_2006_SFO_ref_A_to_F. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/FOCUS_2006_datasets.html b/inst/web/FOCUS_2006_datasets.html index a2ea626c..7aa7f78b 100644 --- a/inst/web/FOCUS_2006_datasets.html +++ b/inst/web/FOCUS_2006_datasets.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>FOCUS_2006_datasets. mkin 0.9.42</title> +<title>FOCUS_2006_datasets. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/FOMC.solution.html b/inst/web/FOMC.solution.html index 2f6a4097..5c17afe4 100644 --- a/inst/web/FOMC.solution.html +++ b/inst/web/FOMC.solution.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>FOMC.solution. mkin 0.9.42</title> +<title>FOMC.solution. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/HS.solution.html b/inst/web/HS.solution.html index d009aa98..7f84cccd 100644 --- a/inst/web/HS.solution.html +++ b/inst/web/HS.solution.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>HS.solution. mkin 0.9.42</title> +<title>HS.solution. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/IORE.solution.html b/inst/web/IORE.solution.html index 1491bccb..f735b3ad 100644 --- a/inst/web/IORE.solution.html +++ b/inst/web/IORE.solution.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>IORE.solution. mkin 0.9.42</title> +<title>IORE.solution. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/SFO.solution.html b/inst/web/SFO.solution.html index 33ba8778..2f0d2ff1 100644 --- a/inst/web/SFO.solution.html +++ b/inst/web/SFO.solution.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>SFO.solution. mkin 0.9.42</title> +<title>SFO.solution. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/SFORB.solution.html b/inst/web/SFORB.solution.html index 42c5a57f..0285188b 100644 --- a/inst/web/SFORB.solution.html +++ b/inst/web/SFORB.solution.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>SFORB.solution. mkin 0.9.42</title> +<title>SFORB.solution. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/endpoints.html b/inst/web/endpoints.html index 9ddcc8b4..0566d93f 100644 --- a/inst/web/endpoints.html +++ b/inst/web/endpoints.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>endpoints. mkin 0.9.42</title> +<title>endpoints. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/geometric_mean.html b/inst/web/geometric_mean.html index 9d47ebdc..82caad0e 100644 --- a/inst/web/geometric_mean.html +++ b/inst/web/geometric_mean.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>geometric_mean. mkin 0.9.42</title> +<title>geometric_mean. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/ilr.html b/inst/web/ilr.html index cb0eef23..bcf1fc26 100644 --- a/inst/web/ilr.html +++ b/inst/web/ilr.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>ilr. mkin 0.9.42</title> +<title>ilr. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" René Lehmann and Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/mccall81_245T.html b/inst/web/mccall81_245T.html index 5b191184..00338040 100644 --- a/inst/web/mccall81_245T.html +++ b/inst/web/mccall81_245T.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>mccall81_245T. mkin 0.9.42</title> +<title>mccall81_245T. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> @@ -112,10 +112,10 @@ fixed_parms = "k_phenol_sink", quiet = TRUE) summary(fit.2, data = FALSE) </div> -<div class='output'>mkin version: 0.9.42 +<div class='output'>mkin version: 0.9.43 R version: 3.2.4 -Date of fit: Wed Mar 23 18:10:44 2016 -Date of summary: Wed Mar 23 18:10:44 2016 +Date of fit: Thu Mar 24 08:26:26 2016 +Date of summary: Thu Mar 24 08:26:26 2016 Equations: d_T245 = - k_T245_sink * T245 - k_T245_phenol * T245 @@ -124,7 +124,7 @@ d_anisole = + k_phenol_anisole * phenol - k_anisole_sink * anisole Model predictions using solution type deSolve -Fitted with method Port using 246 model solutions performed in 1.482 s +Fitted with method Port using 246 model solutions performed in 1.451 s Weighting: none diff --git a/inst/web/mkin_long_to_wide.html b/inst/web/mkin_long_to_wide.html index de36532f..e58ce305 100644 --- a/inst/web/mkin_long_to_wide.html +++ b/inst/web/mkin_long_to_wide.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>mkin_long_to_wide. mkin 0.9.42</title> +<title>mkin_long_to_wide. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/mkin_wide_to_long.html b/inst/web/mkin_wide_to_long.html index 08abc942..ab4f7dbb 100644 --- a/inst/web/mkin_wide_to_long.html +++ b/inst/web/mkin_wide_to_long.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>mkin_wide_to_long. mkin 0.9.42</title> +<title>mkin_wide_to_long. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/mkinds.html b/inst/web/mkinds.html index 5e0f5001..f89128bf 100644 --- a/inst/web/mkinds.html +++ b/inst/web/mkinds.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>mkinds. mkin 0.9.42</title> +<title>mkinds. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/mkinerrmin.html b/inst/web/mkinerrmin.html index f5ab043f..ba665376 100644 --- a/inst/web/mkinerrmin.html +++ b/inst/web/mkinerrmin.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>mkinerrmin. mkin 0.9.42</title> +<title>mkinerrmin. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/mkinfit.html b/inst/web/mkinfit.html index 5b843ae2..43aee184 100644 --- a/inst/web/mkinfit.html +++ b/inst/web/mkinfit.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>mkinfit. mkin 0.9.42</title> +<title>mkinfit. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> @@ -323,17 +323,17 @@ fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE) summary(fit) </div> -<div class='output'>mkin version: 0.9.42 +<div class='output'>mkin version: 0.9.43 R version: 3.2.4 -Date of fit: Wed Mar 23 18:10:46 2016 -Date of summary: Wed Mar 23 18:10:46 2016 +Date of fit: Thu Mar 24 08:26:29 2016 +Date of summary: Thu Mar 24 08:26:29 2016 Equations: d_parent = - (alpha/beta) * 1/((time/beta) + 1) * parent Model predictions using solution type analytical -Fitted with method Port using 64 model solutions performed in 0.191 s +Fitted with method Port using 64 model solutions performed in 0.205 s Weighting: none @@ -409,7 +409,7 @@ print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "eigen", quiet = TRUE))) </div> <div class='output'> user system elapsed - 1.204 1.280 0.942 + 1.200 1.252 0.926 </div> <div class='input'>coef(fit) </div> diff --git a/inst/web/mkinmod.html b/inst/web/mkinmod.html index b3a396b9..0a361956 100644 --- a/inst/web/mkinmod.html +++ b/inst/web/mkinmod.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>mkinmod. mkin 0.9.42</title> +<title>mkinmod. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/mkinparplot.html b/inst/web/mkinparplot.html index 8eee6868..59fddb39 100644 --- a/inst/web/mkinparplot.html +++ b/inst/web/mkinparplot.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>mkinparplot. mkin 0.9.42</title> +<title>mkinparplot. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/mkinplot.html b/inst/web/mkinplot.html index c4542072..1b9a8a02 100644 --- a/inst/web/mkinplot.html +++ b/inst/web/mkinplot.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>mkinplot. mkin 0.9.42</title> +<title>mkinplot. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/mkinpredict.html b/inst/web/mkinpredict.html index 76814960..c831f011 100644 --- a/inst/web/mkinpredict.html +++ b/inst/web/mkinpredict.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>mkinpredict. mkin 0.9.42</title> +<title>mkinpredict. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> @@ -304,7 +304,7 @@ 201 20 4.978707 27.46227 </div> <div class='output'> user system elapsed - 0.004 0.024 0.004 + 0.008 0.020 0.005 </div> <div class='input'> system.time( print(mkinpredict(SFO_SFO, c(k_parent_m1 = 0.05, k_parent_sink = 0.1, k_m1_sink = 0.01), @@ -315,7 +315,7 @@ 201 20 4.978707 27.46227 </div> <div class='output'> user system elapsed - 0.016 0.004 0.002 + 0.008 0.012 0.003 </div> <div class='input'> system.time( print(mkinpredict(SFO_SFO, c(k_parent_m1 = 0.05, k_parent_sink = 0.1, k_m1_sink = 0.01), @@ -326,7 +326,7 @@ 201 20 4.978707 27.46227 </div> <div class='output'> user system elapsed - 0.048 0.008 0.055 + 0.056 0.000 0.052 </div></pre> </div> <div class="span4"> diff --git a/inst/web/mkinresplot.html b/inst/web/mkinresplot.html index 5a2388dc..b5f32633 100644 --- a/inst/web/mkinresplot.html +++ b/inst/web/mkinresplot.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>mkinresplot. mkin 0.9.42</title> +<title>mkinresplot. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/mkinsub.html b/inst/web/mkinsub.html index 2b92fbbc..bd8e1de6 100644 --- a/inst/web/mkinsub.html +++ b/inst/web/mkinsub.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>mkinsub. mkin 0.9.42</title> +<title>mkinsub. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/mmkin.html b/inst/web/mmkin.html index 754be268..d2d1ac28 100644 --- a/inst/web/mmkin.html +++ b/inst/web/mmkin.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>mmkin. mkin 0.9.42</title> +<title>mmkin. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/plot.mkinfit.html b/inst/web/plot.mkinfit.html index 1da0c8e8..11e11d7f 100644 --- a/inst/web/plot.mkinfit.html +++ b/inst/web/plot.mkinfit.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>plot.mkinfit. mkin 0.9.42</title> +<title>plot.mkinfit. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/plot.mmkin.html b/inst/web/plot.mmkin.html index 587bf894..def3a11d 100644 --- a/inst/web/plot.mmkin.html +++ b/inst/web/plot.mmkin.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>plot.mmkin. mkin 0.9.42</title> +<title>plot.mmkin. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/print.mkinds.html b/inst/web/print.mkinds.html index 285684fd..6ff9e02a 100644 --- a/inst/web/print.mkinds.html +++ b/inst/web/print.mkinds.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>print.mkinds. mkin 0.9.42</title> +<title>print.mkinds. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/print.mkinmod.html b/inst/web/print.mkinmod.html index d773050d..16c59669 100644 --- a/inst/web/print.mkinmod.html +++ b/inst/web/print.mkinmod.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>print.mkinmod. mkin 0.9.42</title> +<title>print.mkinmod. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/schaefer07_complex_case.html b/inst/web/schaefer07_complex_case.html index c6b9e980..f2975fe6 100644 --- a/inst/web/schaefer07_complex_case.html +++ b/inst/web/schaefer07_complex_case.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>schaefer07_complex_case. mkin 0.9.42</title> +<title>schaefer07_complex_case. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/summary.mkinfit.html b/inst/web/summary.mkinfit.html index 40e3ca63..4ef29e42 100644 --- a/inst/web/summary.mkinfit.html +++ b/inst/web/summary.mkinfit.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>summary.mkinfit. mkin 0.9.42</title> +<title>summary.mkinfit. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> @@ -157,17 +157,17 @@ <h2 id="examples">Examples</h2> <pre class="examples"><div class='input'> summary(mkinfit(mkinmod(parent = list(type = "SFO")), FOCUS_2006_A, quiet = TRUE)) </div> -<div class='output'>mkin version: 0.9.42 +<div class='output'>mkin version: 0.9.43 R version: 3.2.4 -Date of fit: Wed Mar 23 18:10:56 2016 -Date of summary: Wed Mar 23 18:10:56 2016 +Date of fit: Thu Mar 24 08:26:38 2016 +Date of summary: Thu Mar 24 08:26:38 2016 Equations: d_parent = - k_parent_sink * parent Model predictions using solution type analytical -Fitted with method Port using 35 model solutions performed in 0.109 s +Fitted with method Port using 35 model solutions performed in 0.099 s Weighting: none diff --git a/inst/web/synthetic_data_for_UBA.html b/inst/web/synthetic_data_for_UBA.html index 9fb9d23e..56a646c1 100644 --- a/inst/web/synthetic_data_for_UBA.html +++ b/inst/web/synthetic_data_for_UBA.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>synthetic_data_for_UBA_2014. mkin 0.9.42</title> +<title>synthetic_data_for_UBA_2014. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=""> @@ -32,7 +32,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> diff --git a/inst/web/transform_odeparms.html b/inst/web/transform_odeparms.html index 34428004..5e16551f 100644 --- a/inst/web/transform_odeparms.html +++ b/inst/web/transform_odeparms.html @@ -2,7 +2,7 @@ <html lang="en"> <head> <meta charset="utf-8"> -<title>transform_odeparms. mkin 0.9.42</title> +<title>transform_odeparms. mkin 0.9.43</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content=" Johannes Ranke @@ -34,7 +34,7 @@ <div class="navbar"> <div class="navbar-inner"> <div class="container"> - <a class="brand" href="#">mkin 0.9.42</a> + <a class="brand" href="#">mkin 0.9.43</a> <div class="nav"> <ul class="nav"> <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> @@ -133,10 +133,10 @@ backtransform_odeparms(transparms, mkinmod, transform_rates = TRUE, t fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE) summary(fit, data=FALSE) # See transformed and backtransformed parameters </div> -<div class='output'>mkin version: 0.9.42 +<div class='output'>mkin version: 0.9.43 R version: 3.2.4 -Date of fit: Wed Mar 23 18:10:57 2016 -Date of summary: Wed Mar 23 18:10:57 2016 +Date of fit: Thu Mar 24 08:26:40 2016 +Date of summary: Thu Mar 24 08:26:40 2016 Equations: d_parent = - k_parent_sink * parent - k_parent_m1 * parent @@ -144,7 +144,7 @@ d_m1 = + k_parent_m1 * parent - k_m1_sink * m1 Model predictions using solution type deSolve -Fitted with method Port using 153 model solutions performed in 0.669 s +Fitted with method Port using 153 model solutions performed in 0.662 s Weighting: none |