diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-25 10:35:39 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-25 10:35:39 +0200 |
| commit | e514f8235ee5398da5c5c83d472ca99dd5324066 (patch) | |
| tree | e096590d36e900d8b087ba5282624474b770d05a /log/test.log | |
| parent | 5ac21a5495d984eb6a281973211b2b79a78cda82 (diff) | |
Complete documentation and fix a bug
The bug was introduced by the changes in summary.saem.mmkin.R and
surfaced in the tests when using saemix transformations.
Diffstat (limited to 'log/test.log')
| -rw-r--r-- | log/test.log | 22 |
1 files changed, 11 insertions, 11 deletions
diff --git a/log/test.log b/log/test.log index d7d623d7..b6ec2084 100644 --- a/log/test.log +++ b/log/test.log @@ -1,11 +1,11 @@ ℹ Testing mkin ✔ | F W S OK | Context ✔ | 5 | AIC calculation -✔ | 5 | Analytical solutions for coupled models [3.2s] +✔ | 5 | Analytical solutions for coupled models [3.3s] ✔ | 5 | Calculation of Akaike weights ✔ | 3 | Export dataset for reading into CAKE ✔ | 12 | Confidence intervals and p-values [1.0s] -✔ | 1 12 | Dimethenamid data from 2018 [31.3s] +✔ | 1 12 | Dimethenamid data from 2018 [31.6s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data Reason: Fitting this ODE model with saemix takes about 15 minutes on my system @@ -16,7 +16,7 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s] ✔ | 1 | Fitting the logistic model [0.2s] -✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.4s] +✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.3s] ✔ | 1 12 | Nonlinear mixed-effects models [0.3s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits @@ -29,20 +29,20 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve ✔ | 3 | Model predictions with mkinpredict [0.4s] ✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s] ✔ | 9 | Nonlinear mixed-effects models with nlme [8.3s] -✔ | 16 | Plotting [9.7s] +✔ | 16 | Plotting [9.9s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 37 | saemix parent models [208.2s] -✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s] +✔ | 37 | saemix parent models [208.7s] +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.3s] ✔ | 11 | Processing of residue series -✔ | 7 | Fitting the SFORB model [3.6s] +✔ | 7 | Fitting the SFORB model [3.8s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 5 | Summary [0.2s] -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s] -✔ | 9 | Hypothesis tests [7.6s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.1s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s] +✔ | 9 | Hypothesis tests [7.8s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 304.2 s +Duration: 305.6 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 15 minutes on my system (1) |