diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-31 17:01:58 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-31 17:01:58 +0100 |
| commit | 300aa6ec27529f46deda07874566dc8fcee4e6e7 (patch) | |
| tree | 5a78a7bad10e569d439060ee09547e27f9a45c7b /log/test.log | |
| parent | e444e3eb3e21c66c34ce48775467cd9fa53f2a92 (diff) | |
Fix R CMD check
Diffstat (limited to 'log/test.log')
| -rw-r--r-- | log/test.log | 20 |
1 files changed, 10 insertions, 10 deletions
diff --git a/log/test.log b/log/test.log index b4298c40..bb81dd43 100644 --- a/log/test.log +++ b/log/test.log @@ -5,18 +5,18 @@ ✔ | 5 | Calculation of Akaike weights ✔ | 3 | Export dataset for reading into CAKE ✔ | 12 | Confidence intervals and p-values [1.0s] -✔ | 1 12 | Dimethenamid data from 2018 [31.7s] +✔ | 1 12 | Dimethenamid data from 2018 [31.9s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data Reason: Fitting this ODE model with saemix takes about 15 minutes on my system ──────────────────────────────────────────────────────────────────────────────── -✔ | 14 | Error model fitting [5.0s] +✔ | 14 | Error model fitting [4.9s] ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s] ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s] ✔ | 1 | Fitting the logistic model [0.2s] -✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.4s] +✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [15.8s] ✔ | 1 12 | Nonlinear mixed-effects models [0.3s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_mixed.R:74:3): saemix results are reproducible for biphasic fits @@ -27,12 +27,12 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve ✔ | 3 | mkinfit features [0.7s] ✔ | 8 | mkinmod model generation and printing [0.2s] ✔ | 3 | Model predictions with mkinpredict [0.3s] -✔ | 7 | Multistart method for saem.mmkin models [38.1s] +✔ | 7 | Multistart method for saem.mmkin models [36.3s] ✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.4s] -✔ | 9 | Nonlinear mixed-effects models with nlme [8.6s] -✔ | 16 | Plotting [9.8s] +✔ | 9 | Nonlinear mixed-effects models with nlme [8.9s] +✔ | 16 | Plotting [9.9s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 1 36 | saemix parent models [72.0s] +✔ | 1 36 | saemix parent models [72.6s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_saemix_parent.R:152:3): We can also use mkin solution methods for saem Reason: This still takes almost 2.5 minutes although we do not solve ODEs @@ -43,11 +43,11 @@ Reason: This still takes almost 2.5 minutes although we do not solve ODEs ✔ | 1 | Summaries of old mkinfit objects ✔ | 5 | Summary [0.2s] ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s] -✔ | 9 | Hypothesis tests [8.3s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.1s] +✔ | 9 | Hypothesis tests [8.1s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 208.6 s +Duration: 209.2 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 15 minutes on my system (1) |