Support covariates in endpoints()

1 files changed, 17 insertions, 18 deletions

diff --git a/log/test.log b/log/test.log
index d4fb85a2..d3939c0f 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,14 +1,13 @@
-ℹ Loading mkin
 ℹ Testing mkin
 ✔ | F W S  OK | Context
 ✔ |         5 | AIC calculation
 ✔ |         5 | Analytical solutions for coupled models [2.8s]
 ✔ |         5 | Calculation of Akaike weights
 ✔ |         3 | Export dataset for reading into CAKE
-✔ |        12 | Confidence intervals and p-values [1.0s]
-✔ |     1  12 | Dimethenamid data from 2018 [31.3s]
+✔ |        12 | Confidence intervals and p-values [0.9s]
+✔ |     1  12 | Dimethenamid data from 2018 [30.7s]
 ────────────────────────────────────────────────────────────────────────────────
-Skip ('test_dmta.R:99'): Different backends get consistent results for SFO-SFO3+, dimethenamid data
+Skip ('test_dmta.R:99:3'): Different backends get consistent results for SFO-SFO3+, dimethenamid data
 Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
 ────────────────────────────────────────────────────────────────────────────────
 ✔ |        14 | Error model fitting [6.9s]
@@ -18,9 +17,9 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
 ✔ |         4 | Test fitting the decline of metabolites from their maximum [0.3s]
 ✔ |         1 | Fitting the logistic model [0.2s]
 ✔ |        10 | Batch fitting and diagnosing hierarchical kinetic models [42.7s]
-✔ |     1  11 | Nonlinear mixed-effects models [13.1s]
+✔ |     1  11 | Nonlinear mixed-effects models [13.3s]
 ────────────────────────────────────────────────────────────────────────────────
-Skip ('test_mixed.R:78'): saemix results are reproducible for biphasic fits
+Skip ('test_mixed.R:78:3'): saemix results are reproducible for biphasic fits
 Reason: Fitting with saemix takes around 10 minutes when using deSolve
 ────────────────────────────────────────────────────────────────────────────────
 ✔ |         3 | Test dataset classes mkinds and mkindsg
@@ -28,27 +27,27 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
 ✔ |         3 | mkinfit features [0.6s]
 ✔ |         8 | mkinmod model generation and printing [0.2s]
 ✔ |         3 | Model predictions with mkinpredict [0.3s]
-✔ |        12 | Multistart method for saem.mmkin models [74.1s]
-✔ |        16 | Evaluations according to 2015 NAFTA guidance [1.9s]
-✔ |         9 | Nonlinear mixed-effects models with nlme [8.5s]
-✔ |        15 | Plotting [11.4s]
+✔ |        12 | Multistart method for saem.mmkin models [73.3s]
+✔ |        16 | Evaluations according to 2015 NAFTA guidance [2.0s]
+✔ |         9 | Nonlinear mixed-effects models with nlme [1107.1s]
+✔ |        15 | Plotting [13.3s]
 ✔ |         4 | Residuals extracted from mkinfit models
-✔ |     1  36 | saemix parent models [73.9s]
+✔ |     1  36 | saemix parent models [74.8s]
 ────────────────────────────────────────────────────────────────────────────────
-Skip ('test_saemix_parent.R:143'): We can also use mkin solution methods for saem
+Skip ('test_saemix_parent.R:143:3'): We can also use mkin solution methods for saem
 Reason: This still takes almost 2.5 minutes although we do not solve ODEs
 ────────────────────────────────────────────────────────────────────────────────
-✔ |         2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.1s]
+✔ |         2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s]
 ✔ |        11 | Processing of residue series
-✔ |        10 | Fitting the SFORB model [3.1s]
+✔ |        10 | Fitting the SFORB model [3.3s]
 ✔ |         1 | Summaries of old mkinfit objects
 ✔ |         5 | Summary [0.1s]
-✔ |         4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [1.7s]
-✔ |         9 | Hypothesis tests [6.0s]
-✔ |         4 | Calculation of maximum time weighted average concentrations (TWAs) [1.9s]
+✔ |         4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [1.8s]
+✔ |         9 | Hypothesis tests [6.1s]
+✔ |         4 | Calculation of maximum time weighted average concentrations (TWAs) [1.8s]
 
 ══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 285.4 s
+Duration: 1386.7 s
 
 ── Skipped tests  ──────────────────────────────────────────────────────────────
 • Fitting this ODE model with saemix takes about 15 minutes on my system (1)