diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-13 03:51:22 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-14 14:46:18 +0200 |
| commit | b76e401a854021eaeda6f8ba262baf37b4ecfac2 (patch) | |
| tree | b3c80276c320080c239eb8508e86c9e06b526143 /log/test.log | |
| parent | 37bd36fe8a75163cbf0f97cb7a0e2f7466a53617 (diff) | |
Select best fit from multistart, use in parhist
- Add 'best' and 'which.best' generics with methods for multistart
objects
- Per default, scale the parameters in parhist plots using the fit with
the highest log likelihood.
Diffstat (limited to 'log/test.log')
| -rw-r--r-- | log/test.log | 26 |
1 files changed, 13 insertions, 13 deletions
diff --git a/log/test.log b/log/test.log index 942ed50d..6cd9e6a8 100644 --- a/log/test.log +++ b/log/test.log @@ -5,18 +5,18 @@ ✔ | 5 | Calculation of Akaike weights ✔ | 3 | Export dataset for reading into CAKE ✔ | 12 | Confidence intervals and p-values [1.0s] -✔ | 1 12 | Dimethenamid data from 2018 [31.6s] +✔ | 1 12 | Dimethenamid data from 2018 [31.1s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data Reason: Fitting this ODE model with saemix takes about 15 minutes on my system ──────────────────────────────────────────────────────────────────────────────── -✔ | 14 | Error model fitting [5.0s] +✔ | 14 | Error model fitting [4.9s] ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s] ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] -✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s] +✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s] ✔ | 1 | Fitting the logistic model [0.2s] -✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.5s] +✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.4s] ✔ | 1 12 | Nonlinear mixed-effects models [0.3s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits @@ -26,23 +26,23 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve ✔ | 10 | Special cases of mkinfit calls [0.4s] ✔ | 3 | mkinfit features [0.7s] ✔ | 8 | mkinmod model generation and printing [0.2s] -✔ | 3 | Model predictions with mkinpredict [0.3s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7s] -✔ | 9 | Nonlinear mixed-effects models with nlme [8.6s] -✔ | 16 | Plotting [9.7s] +✔ | 3 | Model predictions with mkinpredict [0.4s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s] +✔ | 9 | Nonlinear mixed-effects models with nlme [8.5s] +✔ | 16 | Plotting [9.8s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 35 | saemix parent models [191.8s] +✔ | 35 | saemix parent models [189.7s] ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s] ✔ | 11 | Processing of residue series -✔ | 7 | Fitting the SFORB model [3.8s] +✔ | 7 | Fitting the SFORB model [3.6s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 5 | Summary [0.2s] -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s] ✔ | 9 | Hypothesis tests [7.8s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.1s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 288.9 s +Duration: 286.0 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 15 minutes on my system (1) |