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authorJohannes Ranke <jranke@uni-bremen.de>2022-10-28 11:59:54 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-10-28 11:59:54 +0200
commitb1740ade9a1746ccdb325b95915ef88872489f03 (patch)
tree7f39227fda408ce2f788dd9481266167fb87505e /log/test.log
parent782bb645325efa8d1d1f971370478fd369b0a107 (diff)
Export status method for mhmkin, move to status.R
Diffstat (limited to 'log/test.log')
-rw-r--r--log/test.log40
1 files changed, 20 insertions, 20 deletions
diff --git a/log/test.log b/log/test.log
index dee62073..429a2e02 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,53 +1,53 @@
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [3.4s]
+✔ | 5 | Analytical solutions for coupled models [3.3s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [32.5s]
+✔ | 1 12 | Dimethenamid data from 2018 [43.2s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
────────────────────────────────────────────────────────────────────────────────
-✔ | 14 | Error model fitting [5.0s]
+✔ | 14 | Error model fitting [11.5s]
✔ | 5 | Time step normalisation
-✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
-✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
-✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s]
-✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.5s]
-✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
+✔ | 4 | Calculation of FOCUS chi2 error levels [1.3s]
+✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.9s]
+✔ | 4 | Test fitting the decline of metabolites from their maximum [0.9s]
+✔ | 1 | Fitting the logistic model [0.6s]
+✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [30.9s]
+✔ | 1 12 | Nonlinear mixed-effects models [0.4s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:74:3): saemix results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
────────────────────────────────────────────────────────────────────────────────
✔ | 3 | Test dataset classes mkinds and mkindsg
-✔ | 10 | Special cases of mkinfit calls [0.4s]
-✔ | 3 | mkinfit features [0.7s]
-✔ | 8 | mkinmod model generation and printing [0.2s]
+✔ | 10 | Special cases of mkinfit calls [0.7s]
+✔ | 3 | mkinfit features [1.0s]
+✔ | 8 | mkinmod model generation and printing [0.3s]
✔ | 3 | Model predictions with mkinpredict [0.3s]
-✔ | 7 | Multistart method for saem.mmkin models [37.6s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.3s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [8.7s]
+✔ | 7 | Multistart method for saem.mmkin models [39.8s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.6s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [8.8s]
✔ | 16 | Plotting [10.1s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 36 | saemix parent models [72.8s]
+✔ | 1 36 | saemix parent models [72.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_saemix_parent.R:152:3): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
────────────────────────────────────────────────────────────────────────────────
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s]
✔ | 11 | Processing of residue series
-✔ | 7 | Fitting the SFORB model [3.7s]
+✔ | 7 | Fitting the SFORB model [3.8s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s]
-✔ | 9 | Hypothesis tests [8.3s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.1s]
+✔ | 9 | Hypothesis tests [8.0s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 210.4 s
+Duration: 249.3 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)

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