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authorRanke Johannes <johannes.ranke@agroscope.admin.ch>2023-08-09 16:03:44 +0200
committerRanke Johannes <johannes.ranke@agroscope.admin.ch>2023-08-09 16:03:44 +0200
commitbd13f94b35e325da350a247c88b249dba62fe22f (patch)
tree43701abba2165dadab7b14d38698337998da0f31 /log/test.log
parent71d2f67189eaaad9b8d61d0f5c709f8d7be65a68 (diff)
Don't install saemix 3.2 from github any more
Emmanuelle has made an official release to CRAN in June
Diffstat (limited to 'log/test.log')
-rw-r--r--log/test.log34
1 files changed, 17 insertions, 17 deletions
diff --git a/log/test.log b/log/test.log
index 3bca2e6a..c872cb1d 100644
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+++ b/log/test.log
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ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [2.9s]
+✔ | 5 | Analytical solutions for coupled models [3.1s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
-✔ | 6 | Use of precompiled symbols in mkinpredict [6.6s]
-✔ | 12 | Confidence intervals and p-values [1.1s]
-✔ | 1 12 | Dimethenamid data from 2018 [32.2s]
-✔ | 14 | Error model fitting [5.4s]
+✔ | 6 | Use of precompiled symbols in mkinpredict [5.3s]
+✔ | 12 | Confidence intervals and p-values
+✔ | 1 12 | Dimethenamid data from 2018 [31.5s]
+✔ | 14 | Error model fitting [5.6s]
✔ | 5 | Time step normalisation
✔ | 4 | Calculation of FOCUS chi2 error levels
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
✔ | 4 | Test fitting the decline of metabolites from their maximum
✔ | 1 | Fitting the logistic model
-✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [46.9s]
-✔ | 2 16 | Nonlinear mixed-effects models [399.6s]
+✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [43.1s]
+✔ | 2 16 | Nonlinear mixed-effects models [441.3s]
✔ | 3 | Test dataset classes mkinds and mkindsg
✔ | 10 | Special cases of mkinfit calls
✔ | 3 | mkinfit features
✔ | 8 | mkinmod model generation and printing
✔ | 3 | Model predictions with mkinpredict
-✔ | 12 | Multistart method for saem.mmkin models [50.1s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.8s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [9.3s]
-✔ | 15 | Plotting [10.9s]
+✔ | 12 | Multistart method for saem.mmkin models [71.6s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.7s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [10.1s]
+✔ | 15 | Plotting [12.1s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 36 | saemix parent models [68.4s]
-✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.2s]
+✔ | 1 36 | saemix parent models [81.8s]
+✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s]
✔ | 11 | Processing of residue series
✔ | 10 | Fitting the SFORB model [3.8s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [1.9s]
-✔ | 9 | Hypothesis tests [6.4s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [1.4s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s]
+✔ | 9 | Hypothesis tests [7.3s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [1.5s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 655.6 s
+Duration: 731.0 s
── Skipped tests (4) ───────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1):

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