Move logs into own directory to clean root

1 files changed, 51 insertions, 0 deletions

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+ℹ Loading mkin
+Loading required package: parallel
+ℹ Testing mkin
+✔ | F W S  OK | Context
+✔ |         5 | AIC calculation
+✔ |         5 | Analytical solutions for coupled models [3.2s]
+✔ |         5 | Calculation of Akaike weights
+✔ |         3 | Export dataset for reading into CAKE
+✔ |        12 | Confidence intervals and p-values [1.0s]
+✔ |     1  12 | Dimethenamid data from 2018 [31.6s]
+────────────────────────────────────────────────────────────────────────────────
+Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
+Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
+────────────────────────────────────────────────────────────────────────────────
+✔ |        14 | Error model fitting [5.1s]
+✔ |         5 | Time step normalisation
+✔ |         4 | Calculation of FOCUS chi2 error levels [0.6s]
+✔ |        14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
+✔ |         4 | Test fitting the decline of metabolites from their maximum [0.3s]
+✔ |         1 | Fitting the logistic model [0.2s]
+✔ |     1  12 | Nonlinear mixed-effects models [0.2s]
+────────────────────────────────────────────────────────────────────────────────
+Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits
+Reason: Fitting with saemix takes around 10 minutes when using deSolve
+────────────────────────────────────────────────────────────────────────────────
+✔ |         3 | Test dataset classes mkinds and mkindsg
+✔ |        10 | Special cases of mkinfit calls [0.4s]
+✔ |         3 | mkinfit features [0.7s]
+✔ |         8 | mkinmod model generation and printing [0.2s]
+✔ |         3 | Model predictions with mkinpredict [0.4s]
+✔ |        16 | Evaluations according to 2015 NAFTA guidance [1.7s]
+✔ |         9 | Nonlinear mixed-effects models with nlme [8.3s]
+✔ |        16 | Plotting [10.6s]
+✔ |         4 | Residuals extracted from mkinfit models
+✔ |        25 | saemix parent models [172.9s]
+✔ |         2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s]
+✔ |         7 | Fitting the SFORB model [3.7s]
+✔ |         1 | Summaries of old mkinfit objects
+✔ |         5 | Summary [0.2s]
+✔ |         4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s]
+✔ |         9 | Hypothesis tests [7.8s]
+✔ |         4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
+
+══ Results ═════════════════════════════════════════════════════════════════════
+Duration: 255.9 s
+
+── Skipped tests  ──────────────────────────────────────────────────────────────
+• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
+• Fitting with saemix takes around 10 minutes when using deSolve (1)
+
+[ FAIL 0 | WARN 0 | SKIP 2 | PASS 225 ]