diff options
| author | Ranke Johannes <johannes.ranke@agroscope.admin.ch> | 2023-08-09 16:03:44 +0200 |
|---|---|---|
| committer | Ranke Johannes <johannes.ranke@agroscope.admin.ch> | 2023-08-09 16:03:44 +0200 |
| commit | bd13f94b35e325da350a247c88b249dba62fe22f (patch) | |
| tree | 43701abba2165dadab7b14d38698337998da0f31 /log/test.log | |
| parent | 71d2f67189eaaad9b8d61d0f5c709f8d7be65a68 (diff) | |
Don't install saemix 3.2 from github any more
Emmanuelle has made an official release to CRAN in June
Diffstat (limited to 'log/test.log')
| -rw-r--r-- | log/test.log | 34 |
1 files changed, 17 insertions, 17 deletions
diff --git a/log/test.log b/log/test.log index 3bca2e6a..c872cb1d 100644 --- a/log/test.log +++ b/log/test.log @@ -1,42 +1,42 @@ ℹ Testing mkin ✔ | F W S OK | Context ✔ | 5 | AIC calculation -✔ | 5 | Analytical solutions for coupled models [2.9s] +✔ | 5 | Analytical solutions for coupled models [3.1s] ✔ | 5 | Calculation of Akaike weights ✔ | 3 | Export dataset for reading into CAKE -✔ | 6 | Use of precompiled symbols in mkinpredict [6.6s] -✔ | 12 | Confidence intervals and p-values [1.1s] -✔ | 1 12 | Dimethenamid data from 2018 [32.2s] -✔ | 14 | Error model fitting [5.4s] +✔ | 6 | Use of precompiled symbols in mkinpredict [5.3s] +✔ | 12 | Confidence intervals and p-values +✔ | 1 12 | Dimethenamid data from 2018 [31.5s] +✔ | 14 | Error model fitting [5.6s] ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) ✔ | 4 | Test fitting the decline of metabolites from their maximum ✔ | 1 | Fitting the logistic model -✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [46.9s] -✔ | 2 16 | Nonlinear mixed-effects models [399.6s] +✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [43.1s] +✔ | 2 16 | Nonlinear mixed-effects models [441.3s] ✔ | 3 | Test dataset classes mkinds and mkindsg ✔ | 10 | Special cases of mkinfit calls ✔ | 3 | mkinfit features ✔ | 8 | mkinmod model generation and printing ✔ | 3 | Model predictions with mkinpredict -✔ | 12 | Multistart method for saem.mmkin models [50.1s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.8s] -✔ | 9 | Nonlinear mixed-effects models with nlme [9.3s] -✔ | 15 | Plotting [10.9s] +✔ | 12 | Multistart method for saem.mmkin models [71.6s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.7s] +✔ | 9 | Nonlinear mixed-effects models with nlme [10.1s] +✔ | 15 | Plotting [12.1s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 1 36 | saemix parent models [68.4s] -✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.2s] +✔ | 1 36 | saemix parent models [81.8s] +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s] ✔ | 11 | Processing of residue series ✔ | 10 | Fitting the SFORB model [3.8s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 5 | Summary -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [1.9s] -✔ | 9 | Hypothesis tests [6.4s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [1.4s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s] +✔ | 9 | Hypothesis tests [7.3s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [1.5s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 655.6 s +Duration: 731.0 s ── Skipped tests (4) ─────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 15 minutes on my system (1): |