diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-26 01:17:30 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-10-26 01:32:33 +0200 |
| commit | 6b910647d22e54a8c0b9c7f837af8dce150d5ee2 (patch) | |
| tree | 75cbe86abe87ae6f333b91d1d40c188fe8fdb2e2 /log/test.log | |
| parent | ab47bcc8075b4361aa9db2a2ebfd7e82f92326b0 (diff) | |
Try to make multistart (more) reproducible
Diffstat (limited to 'log/test.log')
| -rw-r--r-- | log/test.log | 18 |
1 files changed, 9 insertions, 9 deletions
diff --git a/log/test.log b/log/test.log index 3de5a60a..4515f383 100644 --- a/log/test.log +++ b/log/test.log @@ -5,18 +5,18 @@ ✔ | 5 | Calculation of Akaike weights ✔ | 3 | Export dataset for reading into CAKE ✔ | 12 | Confidence intervals and p-values [1.0s] -✔ | 1 12 | Dimethenamid data from 2018 [33.0s] +✔ | 1 12 | Dimethenamid data from 2018 [32.3s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data Reason: Fitting this ODE model with saemix takes about 15 minutes on my system ──────────────────────────────────────────────────────────────────────────────── -✔ | 14 | Error model fitting [5.1s] +✔ | 14 | Error model fitting [5.0s] ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s] ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s] ✔ | 1 | Fitting the logistic model [0.2s] -✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.9s] +✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.3s] ✔ | 1 12 | Nonlinear mixed-effects models [0.3s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_mixed.R:74:3): saemix results are reproducible for biphasic fits @@ -27,12 +27,12 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve ✔ | 3 | mkinfit features [0.7s] ✔ | 8 | mkinmod model generation and printing [0.2s] ✔ | 3 | Model predictions with mkinpredict [0.3s] -✔ | 3 | Multistart method for saem.mmkin models [19.1s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.0s] +✔ | 3 | Multistart method for saem.mmkin models [18.4s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s] ✔ | 9 | Nonlinear mixed-effects models with nlme [8.5s] -✔ | 16 | Plotting [10.6s] +✔ | 16 | Plotting [10.2s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 1 35 | saemix parent models [71.6s] +✔ | 1 35 | saemix parent models [72.5s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_saemix_parent.R:143:3): We can also use mkin solution methods for saem Reason: This still takes almost 2.5 minutes although we do not solve ODEs @@ -43,11 +43,11 @@ Reason: This still takes almost 2.5 minutes although we do not solve ODEs ✔ | 1 | Summaries of old mkinfit objects ✔ | 5 | Summary [0.2s] ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s] -✔ | 9 | Hypothesis tests [8.2s] +✔ | 9 | Hypothesis tests [8.0s] ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 191.7 s +Duration: 189.5 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 15 minutes on my system (1) |