Make mixed model test data permanent to ensure reproducibility

To ensure that tests on different platforms work on the same data, the
mixed modelling test data previosly generated in
tests/testthat/setup_script.R were generated once using the script in
inst/dataset/generation/ds_mixed.R, and are now distributed with the
package.

2 files changed, 16 insertions, 16 deletions

diff --git a/log/check.log b/log/check.log
index 7aa4610c..31fc31eb 100644
--- a/log/check.log
+++ b/log/check.log
@@ -5,7 +5,7 @@
 * using options ‘--no-tests --as-cran’
 * checking for file ‘mkin/DESCRIPTION’ ... OK
 * checking extension type ... Package
-* this is package ‘mkin’ version ‘1.2.0’
+* this is package ‘mkin’ version ‘1.2.1’
 * package encoding: UTF-8
 * checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
 Maintainer: ‘Johannes Ranke <johannes.ranke@jrwb.de>’
@@ -41,7 +41,7 @@ Maintainer: ‘Johannes Ranke <johannes.ranke@jrwb.de>’
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [18s/18s] OK
+* checking R code for possible problems ... [17s/17s] OK
 * checking Rd files ... OK
 * checking Rd metadata ... OK
 * checking Rd line widths ... OK
diff --git a/log/test.log b/log/test.log
index 87d24690..d1de270e 100644
--- a/log/test.log
+++ b/log/test.log
@@ -5,19 +5,19 @@
 ✔ |         5 | Calculation of Akaike weights
 ✔ |         3 | Export dataset for reading into CAKE
 ✔ |        12 | Confidence intervals and p-values [1.0s]
-✔ |     1  12 | Dimethenamid data from 2018 [31.5s]
+✔ |     1  12 | Dimethenamid data from 2018 [32.6s]
 ────────────────────────────────────────────────────────────────────────────────
 Skip ('test_dmta.R:98'): Different backends get consistent results for SFO-SFO3+, dimethenamid data
 Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
 ────────────────────────────────────────────────────────────────────────────────
-✔ |        14 | Error model fitting [5.0s]
+✔ |        14 | Error model fitting [5.1s]
 ✔ |         5 | Time step normalisation
 ✔ |         4 | Calculation of FOCUS chi2 error levels [0.6s]
 ✔ |        14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
 ✔ |         4 | Test fitting the decline of metabolites from their maximum [0.4s]
 ✔ |         1 | Fitting the logistic model [0.2s]
-✔ |        10 | Batch fitting and diagnosing hierarchical kinetic models [24.4s]
-✔ |     1  12 | Nonlinear mixed-effects models [0.3s]
+✔ |        10 | Batch fitting and diagnosing hierarchical kinetic models [24.6s]
+✔ |     1  13 | Nonlinear mixed-effects models [0.4s]
 ────────────────────────────────────────────────────────────────────────────────
 Skip ('test_mixed.R:79'): saemix results are reproducible for biphasic fits
 Reason: Fitting with saemix takes around 10 minutes when using deSolve
@@ -26,32 +26,32 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
 ✔ |        10 | Special cases of mkinfit calls [0.5s]
 ✔ |         3 | mkinfit features [0.7s]
 ✔ |         8 | mkinmod model generation and printing [0.2s]
-✔ |         3 | Model predictions with mkinpredict [0.3s]
-✔ |         9 | Multistart method for saem.mmkin models [36.2s]
+✔ |         3 | Model predictions with mkinpredict [0.4s]
+✔ |         9 | Multistart method for saem.mmkin models [37.3s]
 ✔ |        16 | Evaluations according to 2015 NAFTA guidance [2.5s]
-✔ |         9 | Nonlinear mixed-effects models with nlme [8.8s]
-✔ |        16 | Plotting [10.0s]
+✔ |         9 | Nonlinear mixed-effects models with nlme [9.2s]
+✔ |        16 | Plotting [10.1s]
 ✔ |         4 | Residuals extracted from mkinfit models
-✔ |     1  36 | saemix parent models [65.8s]
+✔ |     1  36 | saemix parent models [71.4s]
 ────────────────────────────────────────────────────────────────────────────────
 Skip ('test_saemix_parent.R:143'): We can also use mkin solution methods for saem
 Reason: This still takes almost 2.5 minutes although we do not solve ODEs
 ────────────────────────────────────────────────────────────────────────────────
 ✔ |         2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s]
 ✔ |        11 | Processing of residue series
-✔ |        10 | Fitting the SFORB model [3.7s]
+✔ |        10 | Fitting the SFORB model [3.9s]
 ✔ |         1 | Summaries of old mkinfit objects
 ✔ |         5 | Summary [0.2s]
-✔ |         4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s]
-✔ |         9 | Hypothesis tests [8.0s]
+✔ |         4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3s]
+✔ |         9 | Hypothesis tests [8.3s]
 ✔ |         4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
 
 ══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 210.4 s
+Duration: 220.0 s
 
 ── Skipped tests  ──────────────────────────────────────────────────────────────
 • Fitting this ODE model with saemix takes about 15 minutes on my system (1)
 • Fitting with saemix takes around 10 minutes when using deSolve (1)
 • This still takes almost 2.5 minutes although we do not solve ODEs (1)
 
-[ FAIL 0 | WARN 0 | SKIP 3 | PASS 269 ]
+[ FAIL 0 | WARN 0 | SKIP 3 | PASS 270 ]