diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-08-08 10:11:04 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-08-08 10:11:04 +0200 |
| commit | 22d21cf5efcfb52c59c969d393bb0be077e982dd (patch) | |
| tree | c8d97e7fff25d42019bb5a5908a5ce228cac6fb5 /log | |
| parent | 546c540fecb60b51c3e265911282881315a8c937 (diff) | |
Fix fitting HS with saemix transformations
Diffstat (limited to 'log')
| -rw-r--r-- | log/test.log | 22 |
1 files changed, 10 insertions, 12 deletions
diff --git a/log/test.log b/log/test.log index 266a566f..776b6f49 100644 --- a/log/test.log +++ b/log/test.log @@ -1,13 +1,11 @@ -ℹ Loading mkin -Loading required package: parallel ℹ Testing mkin ✔ | F W S OK | Context ✔ | 5 | AIC calculation -✔ | 5 | Analytical solutions for coupled models [3.2s] +✔ | 5 | Analytical solutions for coupled models [3.3s] ✔ | 5 | Calculation of Akaike weights ✔ | 3 | Export dataset for reading into CAKE ✔ | 12 | Confidence intervals and p-values [1.0s] -✔ | 1 12 | Dimethenamid data from 2018 [31.6s] +✔ | 1 12 | Dimethenamid data from 2018 [32.0s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data Reason: Fitting this ODE model with saemix takes about 15 minutes on my system @@ -16,7 +14,7 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s] ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] -✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s] +✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s] ✔ | 1 | Fitting the logistic model [0.2s] ✔ | 1 12 | Nonlinear mixed-effects models [0.2s] ──────────────────────────────────────────────────────────────────────────────── @@ -28,13 +26,13 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve ✔ | 3 | mkinfit features [0.7s] ✔ | 8 | mkinmod model generation and printing [0.2s] ✔ | 3 | Model predictions with mkinpredict [0.4s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7s] -✔ | 9 | Nonlinear mixed-effects models with nlme [8.3s] -✔ | 16 | Plotting [10.6s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s] +✔ | 9 | Nonlinear mixed-effects models with nlme [9.1s] +✔ | 16 | Plotting [10.7s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 25 | saemix parent models [172.9s] +✔ | 27 | saemix parent models [178.6s] ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s] -✔ | 7 | Fitting the SFORB model [3.7s] +✔ | 7 | Fitting the SFORB model [3.6s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 5 | Summary [0.2s] ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s] @@ -42,10 +40,10 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 255.9 s +Duration: 263.0 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 15 minutes on my system (1) • Fitting with saemix takes around 10 minutes when using deSolve (1) -[ FAIL 0 | WARN 0 | SKIP 2 | PASS 225 ] +[ FAIL 0 | WARN 0 | SKIP 2 | PASS 227 ] |