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authorJohannes Ranke <jranke@uni-bremen.de>2022-09-16 10:12:54 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-09-16 10:12:54 +0200
commit03e1598a3c79911a497758fe382461f288bf05e6 (patch)
tree9b6476bc8e6d2fc9d3a70ad73f20a4ea5d75735b /log
parentaf24cde56a49b532d7f65dd199d176e0ce3cac09 (diff)
Diagnostic plots for multistart method
Diffstat (limited to 'log')
-rw-r--r--log/test.log28
1 files changed, 14 insertions, 14 deletions
diff --git a/log/test.log b/log/test.log
index 8be4a512..cb123776 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,23 +1,23 @@
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [3.4s]
+✔ | 5 | Analytical solutions for coupled models [3.3s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
-✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [32.4s]
+✔ | 12 | Confidence intervals and p-values [1.1s]
+✔ | 1 12 | Dimethenamid data from 2018 [32.5s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
────────────────────────────────────────────────────────────────────────────────
-✔ | 14 | Error model fitting [5.0s]
+✔ | 14 | Error model fitting [5.1s]
✔ | 5 | Time step normalisation
✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s]
✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 5 | Batch fitting and diagnosing hierarchical kinetic models [14.5s]
-✔ | 1 12 | Nonlinear mixed-effects models [0.2s]
+✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.6s]
+✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
@@ -26,25 +26,25 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 10 | Special cases of mkinfit calls [0.4s]
✔ | 3 | mkinfit features [0.7s]
✔ | 8 | mkinmod model generation and printing [0.2s]
-✔ | 3 | Model predictions with mkinpredict [0.4s]
+✔ | 3 | Model predictions with mkinpredict [0.3s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [8.7s]
-✔ | 16 | Plotting [10.1s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [8.5s]
+✔ | 16 | Plotting [10.0s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 28 | saemix parent models [181.2s]
+✔ | 28 | saemix parent models [183.3s]
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s]
✔ | 7 | Fitting the SFORB model [3.7s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s]
-✔ | 9 | Hypothesis tests [7.8s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.1s]
+✔ | 9 | Hypothesis tests [8.1s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 279.6 s
+Duration: 282.2 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
• Fitting with saemix takes around 10 minutes when using deSolve (1)
-[ FAIL 0 | WARN 0 | SKIP 2 | PASS 233 ]
+[ FAIL 0 | WARN 0 | SKIP 2 | PASS 235 ]

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