Use roxygen for functions and methods

1 files changed, 54 insertions, 58 deletions

diff --git a/man/max_twa_parent.Rd b/man/max_twa_parent.Rd
index c601b768..7c9f4861 100644
--- a/man/max_twa_parent.Rd
+++ b/man/max_twa_parent.Rd
@@ -1,80 +1,76 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/max_twa_parent.R
 \name{max_twa_parent}
 \alias{max_twa_parent}
 \alias{max_twa_sfo}
 \alias{max_twa_fomc}
 \alias{max_twa_dfop}
 \alias{max_twa_hs}
-\title{
-  Function to calculate maximum time weighted average concentrations from kinetic models fitted with mkinfit
-}
-\description{
-This function calculates maximum moving window time weighted average concentrations
-(TWAs) for kinetic models fitted with \code{\link{mkinfit}}. Currently, only
-calculations for the parent are implemented for the SFO, FOMC, DFOP and HS models,
-using the analytical formulas given in the PEC soil section of the FOCUS
-guidance.}
+\title{Function to calculate maximum time weighted average concentrations from
+kinetic models fitted with mkinfit}
 \usage{
-  max_twa_parent(fit, windows)
-  max_twa_sfo(M0 = 1, k, t)
-  max_twa_fomc(M0 = 1, alpha, beta, t)
-  max_twa_dfop(M0 = 1, k1, k2, g, t)
-  max_twa_hs(M0 = 1, k1, k2, tb, t)
+max_twa_parent(fit, windows)
+
+max_twa_sfo(M0 = 1, k, t)
+
+max_twa_fomc(M0 = 1, alpha, beta, t)
+
+max_twa_dfop(M0 = 1, k1, k2, g, t)
+
+max_twa_hs(M0 = 1, k1, k2, tb, t)
 }
 \arguments{
-  \item{fit}{
-    An object of class \code{\link{mkinfit}}.
-  }
-  \item{windows}{
-    The width of the time windows for which the TWAs should be calculated.
-  }
-  \item{M0}{
-   The initial concentration for which the maximum time weighted
-   average over the decline curve should be calculated. The default
-   is to use a value of 1, which means that a relative maximum time
-   weighted average factor (f_twa) is calculated.
-  }
-  \item{k}{
-    The rate constant in the case of SFO kinetics.
-  }
-  \item{t}{
-    The width of the time window.
-  }
-  \item{alpha}{
-    Parameter of the FOMC model.
-  }
-  \item{beta}{
-    Parameter of the FOMC model.
-  }
-  \item{k1}{
-    The first rate constant of the DFOP or the HS kinetics.
-  }
-  \item{k2}{
-    The second rate constant of the DFOP or the HS kinetics.
-  }
-  \item{g}{
-    Parameter of the DFOP model.
-  }
-  \item{tb}{
-    Parameter of the HS model.
-  }
+\item{fit}{An object of class \code{\link{mkinfit}}.}
+
+\item{windows}{The width of the time windows for which the TWAs should be
+calculated.}
+
+\item{M0}{The initial concentration for which the maximum time weighted
+average over the decline curve should be calculated. The default is to use
+a value of 1, which means that a relative maximum time weighted average
+factor (f_twa) is calculated.}
+
+\item{k}{The rate constant in the case of SFO kinetics.}
+
+\item{t}{The width of the time window.}
+
+\item{alpha}{Parameter of the FOMC model.}
+
+\item{beta}{Parameter of the FOMC model.}
+
+\item{k1}{The first rate constant of the DFOP or the HS kinetics.}
+
+\item{k2}{The second rate constant of the DFOP or the HS kinetics.}
+
+\item{g}{Parameter of the DFOP model.}
+
+\item{tb}{Parameter of the HS model.}
 }
 \value{
-  For \code{max_twa_parent}, a numeric vector, named using the \code{windows} argument.
-  For the other functions, a numeric vector of length one (also known as 'a
-  number').
+For \code{max_twa_parent}, a numeric vector, named using the
+  \code{windows} argument.  For the other functions, a numeric vector of
+  length one (also known as 'a number').
+}
+\description{
+This function calculates maximum moving window time weighted average
+concentrations (TWAs) for kinetic models fitted with \code{\link{mkinfit}}.
+Currently, only calculations for the parent are implemented for the SFO,
+FOMC, DFOP and HS models, using the analytical formulas given in the PEC
+soil section of the FOCUS guidance.
 }
 \examples{
+
   fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE)
   max_twa_parent(fit, c(7, 21))
+
 }
 \references{
-  FOCUS (2006) \dQuote{Guidance Document on Estimating Persistence and
-  Degradation Kinetics from Environmental Fate Studies on Pesticides in EU
-  Registration} Report of the FOCUS Work Group on Degradation Kinetics,
+FOCUS (2006) \dQuote{Guidance Document on Estimating Persistence
+  and Degradation Kinetics from Environmental Fate Studies on Pesticides in
+  EU Registration} Report of the FOCUS Work Group on Degradation Kinetics,
   EC Document Reference Sanco/10058/2005 version 2.0, 434 pp,
   \url{http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics}
 }
 \author{
-  Johannes Ranke
+Johannes Ranke
 }
-\keyword{ manip }