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author | Johannes Ranke <jranke@uni-bremen.de> | 2020-12-08 22:08:38 +0100 |
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committer | Johannes Ranke <jranke@uni-bremen.de> | 2020-12-08 22:08:38 +0100 |
commit | f606838c5310f365eea1c0d6421f5c3636a4dc79 (patch) | |
tree | bdf4fdb5cb3a94cc46176f9e69132af11e81f749 /man/mixed.Rd | |
parent | 2663158c85fca9c088d1f8cfa3bc05ad1ac36f94 (diff) |
mixed.mmkin and test coverage
Diffstat (limited to 'man/mixed.Rd')
-rw-r--r-- | man/mixed.Rd | 69 |
1 files changed, 69 insertions, 0 deletions
diff --git a/man/mixed.Rd b/man/mixed.Rd new file mode 100644 index 00000000..8b00382d --- /dev/null +++ b/man/mixed.Rd @@ -0,0 +1,69 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/mixed.mmkin.R +\name{mixed} +\alias{mixed} +\alias{mixed.mmkin} +\alias{print.mixed.mmkin} +\title{Create a mixed effects model from an mmkin row object} +\usage{ +mixed(object, ...) + +\method{mixed}{mmkin}(object, method = c("none"), ...) + +\method{print}{mixed.mmkin}(x, digits = max(3, getOption("digits") - 3), ...) +} +\arguments{ +\item{object}{An \link{mmkin} row object} + +\item{\dots}{Currently not used} + +\item{method}{The method to be used} + +\item{x}{A mixed.mmkin object to print} + +\item{digits}{Number of digits to use for printing.} +} +\description{ +Create a mixed effects model from an mmkin row object +} +\examples{ +sampling_times = c(0, 1, 3, 7, 14, 28, 60, 90, 120) +n_biphasic <- 8 +err_1 = list(const = 1, prop = 0.07) + +DFOP_SFO <- mkinmod( + parent = mkinsub("DFOP", "m1"), + m1 = mkinsub("SFO"), + quiet = TRUE) + +set.seed(123456) +log_sd <- 0.3 +syn_biphasic_parms <- as.matrix(data.frame( + k1 = rlnorm(n_biphasic, log(0.05), log_sd), + k2 = rlnorm(n_biphasic, log(0.01), log_sd), + g = plogis(rnorm(n_biphasic, 0, log_sd)), + f_parent_to_m1 = plogis(rnorm(n_biphasic, 0, log_sd)), + k_m1 = rlnorm(n_biphasic, log(0.002), log_sd))) + +ds_biphasic_mean <- lapply(1:n_biphasic, + function(i) { + mkinpredict(DFOP_SFO, syn_biphasic_parms[i, ], + c(parent = 100, m1 = 0), sampling_times) + } +) + +set.seed(123456L) +ds_biphasic <- lapply(ds_biphasic_mean, function(ds) { + add_err(ds, + sdfunc = function(value) sqrt(err_1$const^2 + value^2 * err_1$prop^2), + n = 1, secondary = "m1")[[1]] +}) + +\dontrun{ +f_mmkin <- mmkin(list("DFOP-SFO" = DFOP_SFO), ds_biphasic, error_model = "tc", quiet = TRUE) + +f_mixed <- mixed(f_mmkin) +print(f_mixed) +plot(f_mixed) +} +} |