Start of the transition to fitting transformed parameters.

Many things are broken now (see TODO list)



git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@20 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

1 files changed, 1 insertions, 12 deletions

diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd
index d4139eb3..24dcb83e 100644
--- a/man/mkinfit.Rd
+++ b/man/mkinfit.Rd
@@ -11,9 +11,8 @@
 }
 \usage{
 mkinfit(mkinmod, observed, 
-  parms.ini = rep(0.1, length(mkinmod$parms)), 
+  parms.ini = "auto",
   state.ini = c(100, rep(0, length(mkinmod$diffs) - 1)), 
-  lower = 0, upper = Inf, 
   fixed_parms = NULL, fixed_initials = names(mkinmod$diffs)[-1], 
   eigen = FALSE,
   plot = FALSE, quiet = FALSE, err = NULL, weight = "none", 
@@ -48,16 +47,6 @@ mkinfit(mkinmod, observed,
     \code{\link{mkinmod}}). The default is to set the initial value of the first model
     variable to 100 and all others to 0.
   }
-  \item{lower}{
-    Lower bounds for the parameters, passed to \code{\link{modFit}}. Defaults to 0 because
-    negative values to not make sense for the models currently created by \code{\link{mkinmod}}.
-  }
-  \item{upper}{
-    Upper bounds for the parameters, passed to \code{\link{modFit}}. Defaults to \code{Inf} 
-    except for formation fraction parameters. Setting non-infinite upper bounds has a strong 
-    impact on performance, and using a method like "L-BFGS-B" (by specifying an additional 
-    \code{method} argument) is recommended.
-  }
   \item{fixed_parms}{
     The names of parameters that should not be optimised but rather kept at the values
     specified in \code{parms.ini}.