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| author | Johannes Ranke <jranke@uni-bremen.de> | 2020-03-30 14:03:51 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2020-03-30 14:03:51 +0200 |
| commit | 405cde11f9f26fcab0742e84c110cf3dcb2a4c1f (patch) | |
| tree | c00c880d74676581fcbaa2d9aa7fb4c739f79b18 /man/mkinfit.Rd | |
| parent | 6263a53ef24ff0c06e5f4a869a987f41f361bc58 (diff) | |
First nlme fits for models with a metabolite
Diffstat (limited to 'man/mkinfit.Rd')
| -rw-r--r-- | man/mkinfit.Rd | 33 |
1 files changed, 24 insertions, 9 deletions
diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd index e58e61e2..45036361 100644 --- a/man/mkinfit.Rd +++ b/man/mkinfit.Rd @@ -8,18 +8,33 @@ Rocke, David M. und Lorenzato, Stefan (1995) A two-component model for measurement error in analytical chemistry. Technometrics 37(2), 176-184. } \usage{ -mkinfit(mkinmod, observed, parms.ini = "auto", state.ini = "auto", - err.ini = "auto", fixed_parms = NULL, - fixed_initials = names(mkinmod$diffs)[-1], from_max_mean = FALSE, +mkinfit( + mkinmod, + observed, + parms.ini = "auto", + state.ini = "auto", + err.ini = "auto", + fixed_parms = NULL, + fixed_initials = names(mkinmod$diffs)[-1], + from_max_mean = FALSE, solution_type = c("auto", "analytical", "eigen", "deSolve"), - method.ode = "lsoda", use_compiled = "auto", + method.ode = "lsoda", + use_compiled = "auto", control = list(eval.max = 300, iter.max = 200), - transform_rates = TRUE, transform_fractions = TRUE, quiet = FALSE, - atol = 1e-08, rtol = 1e-10, n.outtimes = 100, + transform_rates = TRUE, + transform_fractions = TRUE, + quiet = FALSE, + atol = 1e-08, + rtol = 1e-10, + n.outtimes = 100, error_model = c("const", "obs", "tc"), - error_model_algorithm = c("auto", "d_3", "direct", "twostep", - "threestep", "fourstep", "IRLS", "OLS"), reweight.tol = 1e-08, - reweight.max.iter = 10, trace_parms = FALSE, ...) + error_model_algorithm = c("auto", "d_3", "direct", "twostep", "threestep", "fourstep", + "IRLS", "OLS"), + reweight.tol = 1e-08, + reweight.max.iter = 10, + trace_parms = FALSE, + ... +) } \arguments{ \item{mkinmod}{A list of class \code{\link{mkinmod}}, containing the kinetic |