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| author | Johannes Ranke <jranke@uni-bremen.de> | 2020-11-30 14:50:33 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2020-11-30 14:50:33 +0100 |
| commit | 78884beed74c18c99521b9ceeaa643e13cf94c06 (patch) | |
| tree | af1ebfd975cac837a6bf15c86638299a67a0e017 /man/mkinmod.Rd | |
| parent | b3bebc06061cc77b6d549f7b2760afe0b9489bf7 (diff) | |
Log-Cholesky parameterisation as default in nlme.mmkin
Diffstat (limited to 'man/mkinmod.Rd')
| -rw-r--r-- | man/mkinmod.Rd | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/man/mkinmod.Rd b/man/mkinmod.Rd index 77319aac..95cec09a 100644 --- a/man/mkinmod.Rd +++ b/man/mkinmod.Rd @@ -155,13 +155,17 @@ print(SFO_SFO) fit_sfo_sfo <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE, solution_type = "deSolve") # Now supplying compound names used for plotting, and write to user defined location + # We need to choose a path outside the session tempdir because this gets removed + DLL_dir <- "~/.local/share/mkin" + if (!dir.exists(DLL_dir)) dir.create(DLL_dir) SFO_SFO.2 <- mkinmod( parent = mkinsub("SFO", "m1", full_name = "Test compound"), m1 = mkinsub("SFO", full_name = "Metabolite M1"), - name = "SFO_SFO", dll_dir = "~/dll", unload = TRUE, overwrite = TRUE) + name = "SFO_SFO", dll_dir = DLL_dir, unload = TRUE, overwrite = TRUE) # Now we can save the model and restore it in a new session saveRDS(SFO_SFO.2, file = "~/SFO_SFO.rds") # Terminate the R session here if you would like to check, and then do +library(mkin) SFO_SFO.3 <- readRDS("~/SFO_SFO.rds") fit_sfo_sfo <- mkinfit(SFO_SFO.3, FOCUS_2006_D, quiet = TRUE, solution_type = "deSolve") |