Remove trailing whitespace, clean headers

Also ignore test.R in the top level directory, as it is not meant to
be public

1 files changed, 13 insertions, 13 deletions

diff --git a/man/mkinpredict.Rd b/man/mkinpredict.Rd
index f9eec532..524abbb5 100644
--- a/man/mkinpredict.Rd
+++ b/man/mkinpredict.Rd
@@ -43,8 +43,8 @@
     "lsoda" is performant, but sometimes fails to converge.
   }
   \item{use_compiled}{
-    If set to \code{FALSE}, no compiled version of the \code{\link{mkinmod}} 
-    model is used, even if is present. 
+    If set to \code{FALSE}, no compiled version of the \code{\link{mkinmod}}
+    model is used, even if is present.
   }
   \item{atol}{
     Absolute error tolerance, passed to \code{\link{ode}}. Default is 1e-8,
@@ -56,7 +56,7 @@
   }
   \item{map_output}{
     Boolean to specify if the output should list values for the observed
-    variables (default) or for all state variables (if set to FALSE). 
+    variables (default) or for all state variables (if set to FALSE).
   }
   \item{\dots}{
     Further arguments passed to the ode solver in case such a solver is used.
@@ -71,20 +71,20 @@
 \examples{
   SFO <- mkinmod(degradinol = list(type = "SFO"))
   # Compare solution types
-  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20, 
+  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
 	      solution_type = "analytical")
-  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20, 
+  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
 	      solution_type = "deSolve")
-  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20, 
+  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
 	      solution_type = "deSolve", use_compiled = FALSE)
-  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20, 
+  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
 	      solution_type = "eigen")
 
 
   # Compare integration methods to analytical solution
-  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20, 
+  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
 	      solution_type = "analytical")[21,]
-  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20, 
+  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
 	      method = "lsoda")[21,]
   mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20,
 	      method = "ode45")[21,]
@@ -94,9 +94,9 @@
 
   # The number of output times used to make a lot of difference until the
   # default for atol was adjusted
-  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 
+  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100),
 	      seq(0, 20, by = 0.1))[201,]
-  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 
+  mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100),
 	      seq(0, 20, by = 0.01))[2001,]
 
   # Check compiled model versions - they are faster than the eigenvalue based solutions!
@@ -108,11 +108,11 @@
                 solution_type = "eigen")[201,]))
   system.time(
     print(mkinpredict(SFO_SFO, c(k_parent_m1 = 0.05, k_parent_sink = 0.1, k_m1_sink = 0.01),
-                c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), 
+                c(parent = 100, m1 = 0), seq(0, 20, by = 0.1),
                 solution_type = "deSolve")[201,]))
   system.time(
     print(mkinpredict(SFO_SFO, c(k_parent_m1 = 0.05, k_parent_sink = 0.1, k_m1_sink = 0.01),
-                c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), 
+                c(parent = 100, m1 = 0), seq(0, 20, by = 0.1),
                 solution_type = "deSolve", use_compiled = FALSE)[201,]))
 }
 \keyword{ manip }