Use roxygen for functions and methods

1 files changed, 25 insertions, 29 deletions

diff --git a/man/mkinsub.Rd b/man/mkinsub.Rd
index 84e38e21..6522a37e 100644
--- a/man/mkinsub.Rd
+++ b/man/mkinsub.Rd
@@ -1,42 +1,35 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/mkinsub.R
 \name{mkinsub}
 \alias{mkinsub}
-\title{
-  Function to set up a kinetic submodel for one state variable
-}
-\description{
-  This is a convenience function to set up the lists used as arguments for
-  \code{\link{mkinmod}}.
-}
+\title{Function to set up a kinetic submodel for one state variable}
 \usage{
 mkinsub(submodel, to = NULL, sink = TRUE, full_name = NA)
 }
 \arguments{
-  \item{submodel}{
-    Character vector of length one to specify the submodel type. See
-    \code{\link{mkinmod}} for the list of allowed submodel names.
-  }
-  \item{to}{
-    Vector of the names of the state variable to which a transformation
-    shall be included in the model.
-  }
-  \item{sink}{
-    Should a pathway to sink be included in the model in addition to the
-    pathways to other state variables?
-  }
-  \item{full_name}{
-    An optional name to be used e.g. for plotting fits performed with the model.
-    You can use non-ASCII characters here, but then your R code will not be
-    portable, \emph{i.e.} may produce unintended plot results on other
-    operating systems or system configurations.
-  }
+\item{submodel}{Character vector of length one to specify the submodel type.
+See \code{\link{mkinmod}} for the list of allowed submodel names.}
+
+\item{to}{Vector of the names of the state variable to which a
+transformation shall be included in the model.}
+
+\item{sink}{Should a pathway to sink be included in the model in addition to
+the pathways to other state variables?}
+
+\item{full_name}{An optional name to be used e.g. for plotting fits
+performed with the model.  You can use non-ASCII characters here, but then
+your R code will not be portable, \emph{i.e.} may produce unintended plot
+results on other operating systems or system configurations.}
 }
 \value{
-  A list for use with \code{\link{mkinmod}}.
+A list for use with \code{\link{mkinmod}}.
 }
-\author{
-  Johannes Ranke
+\description{
+This is a convenience function to set up the lists used as arguments for
+\code{\link{mkinmod}}.
 }
 \examples{
+
 # One parent compound, one metabolite, both single first order.
 SFO_SFO <- mkinmod(
   parent = list(type = "SFO", to = "m1"),
@@ -51,5 +44,8 @@ SFO_SFO.2 <- mkinmod(
 SFO_SFO.2 <- mkinmod(
   parent = mkinsub("SFO", "m1", full_name = "Test compound"),
   m1 = mkinsub("SFO", full_name = "Metabolite M1"))
-}
 
+}
+\author{
+Johannes Ranke
+}