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| author | Johannes Ranke <jranke@uni-bremen.de> | 2015-04-14 19:50:57 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2015-04-14 19:50:57 +0200 |
| commit | b21c601052f85e392e48d903b8903a1a392fe786 (patch) | |
| tree | 61f8cb65d362eb1a2fddab0aa4081b9111eac82d /man | |
| parent | 42739646dc36ff74d43b638fc2c4f5259496e2b9 (diff) | |
Compile differential equation models with ccSolve package
If the ccSolve package is available, and time is not in the right hand
side of the equations (i.e. if only SFO and SFORB models are used),
the differential equation model is compiled from auto-generated C code.
Currently, one test (FOCUS 2006 D SFO_SFO) fails
Diffstat (limited to 'man')
| -rw-r--r-- | man/mkinfit.Rd | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd index 9c82f5ff..466f587c 100644 --- a/man/mkinfit.Rd +++ b/man/mkinfit.Rd @@ -235,7 +235,8 @@ SFO_SFO <- mkinmod( parent = list(type = "SFO", to = "m1", sink = TRUE), m1 = list(type = "SFO")) # Fit the model to the FOCUS example dataset D using defaults -fit <- mkinfit(SFO_SFO, FOCUS_2006_D) +fit <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "eigen") +fit.deSolve <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "deSolve") summary(fit) # Use stepwise fitting, using optimised parameters from parent only fit, FOMC @@ -258,10 +259,10 @@ SFORB_SFO <- mkinmod( m1 = list(type = "SFO")) # Fit the model to the FOCUS example dataset D using defaults fit.SFORB_SFO <- mkinfit(SFORB_SFO, FOCUS_2006_D) +fit.SFORB_SFO.deSolve <- mkinfit(SFORB_SFO, FOCUS_2006_D, solution_type = "deSolve") # Use starting parameters from parent only SFORB fit (not really needed in this case) fit.SFORB = mkinfit(SFORB, FOCUS_2006_D) fit.SFORB_SFO <- mkinfit(SFORB_SFO, FOCUS_2006_D, parms.ini = fit.SFORB$bparms.ode) -} # Weighted fits, including IRLS SFO_SFO.ff <- mkinmod(parent = list(type = "SFO", to = "m1"), |