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author | Johannes Ranke <jranke@uni-bremen.de> | 2016-03-23 17:03:09 +0100 |
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committer | Johannes Ranke <jranke@uni-bremen.de> | 2016-03-23 18:00:06 +0100 |
commit | 7875935fdfc3c55e0ef328b3c3a4512a30011df1 (patch) | |
tree | cb0c1596d34d4db08271890ac922f026a53206cf /man | |
parent | c9667fbfd5a8c9601ac0c977776b12fe7d9b19dd (diff) |
Added 'from_max_mean' to 'mkinfit'.
- Now it is easier to do decline kinetics from the maximum occurrence
- Static documentation rebuilt by staticdocs::build_site()
- Fixed an URL in the README, thanks to the win-builder check with
R-devel
Diffstat (limited to 'man')
-rw-r--r-- | man/mkinfit.Rd | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd index a75d23ac..e4041755 100644 --- a/man/mkinfit.Rd +++ b/man/mkinfit.Rd @@ -21,6 +21,7 @@ mkinfit(mkinmod, observed, parms.ini = "auto", state.ini = "auto", fixed_parms = NULL, fixed_initials = names(mkinmod$diffs)[-1], + from_max_mean = FALSE, solution_type = c("auto", "analytical", "eigen", "deSolve"), method.ode = "lsoda", use_compiled = "auto", @@ -85,6 +86,13 @@ mkinfit(mkinmod, observed, be excluded from the optimisation. Defaults to all state variables except for the first one. } + \item{from_max_mean}{ + If this is set to TRUE, and the model has only one observed variable, then + data before the time of the maximum observed value (after averaging for each + sampling time) are discarded, and this time is subtracted from all + remaining time values, so the time of the maximum observed mean value is + the new time zero. + } \item{solution_type}{ If set to "eigen", the solution of the system of differential equations is based on the spectral decomposition of the coefficient matrix in cases that |