Better initials for error model parameters

- Also make it possible to specify initial values for error model
parameters.
- Run tests
- Rebuild docs

1 files changed, 7 insertions, 0 deletions

diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd
index d9efe05f..78a53ee0 100644
--- a/man/mkinfit.Rd
+++ b/man/mkinfit.Rd
@@ -19,6 +19,7 @@
 mkinfit(mkinmod, observed,
   parms.ini = "auto",
   state.ini = "auto",
+  err.ini = "auto",
   fixed_parms = NULL, fixed_initials = names(mkinmod$diffs)[-1],
   from_max_mean = FALSE,
   solution_type = c("auto", "analytical", "eigen", "deSolve"),
@@ -72,6 +73,12 @@ mkinfit(mkinmod, observed,
     values for the variable with the maximum observed value, and all others to 0.
     If this variable has no time zero observations, its initial value is set to 100.
   }
+  \item{err.ini}{
+    A named vector of initial values for the error model parameters to be
+    optimised.  If set to "auto", initial values are set to default values.
+    Otherwise, inital values for all error model parameters must be
+    given.
+  }
   \item{fixed_parms}{
     The names of parameters that should not be optimised but rather kept at the
     values specified in \code{parms.ini}.