intervals() methods, more DFOP/tc variants

4 files changed, 54 insertions, 4 deletions

diff --git a/man/intervals.nlmixr.mmkin.Rd b/man/intervals.nlmixr.mmkin.Rd
new file mode 100644
index 00000000..b1ab5da4
--- /dev/null
+++ b/man/intervals.nlmixr.mmkin.Rd
@@ -0,0 +1,23 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/intervals.R
+\name{intervals.nlmixr.mmkin}
+\alias{intervals.nlmixr.mmkin}
+\title{Confidence intervals for parameters in nlmixr.mmkin objects}
+\usage{
+\method{intervals}{nlmixr.mmkin}(object, level = 0.95, backtransform = TRUE, ...)
+}
+\arguments{
+\item{object}{The fitted saem.mmkin object}
+
+\item{level}{The confidence level.}
+
+\item{backtransform}{Should we backtransform the parameters where a one to
+one correlation between transformed and backtransformed parameters exists?}
+}
+\value{
+An object with 'intervals.saem.mmkin' and 'intervals.lme' in the
+class attribute
+}
+\description{
+Confidence intervals for parameters in nlmixr.mmkin objects
+}
diff --git a/man/intervals.saem.mmkin.Rd b/man/intervals.saem.mmkin.Rd
new file mode 100644
index 00000000..4a41dd1b
--- /dev/null
+++ b/man/intervals.saem.mmkin.Rd
@@ -0,0 +1,25 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/intervals.R
+\name{intervals.saem.mmkin}
+\alias{intervals.saem.mmkin}
+\title{Confidence intervals for parameters in saem.mmkin objects}
+\usage{
+\method{intervals}{saem.mmkin}(object, level = 0.95, backtransform = TRUE, ...)
+}
+\arguments{
+\item{object}{The fitted saem.mmkin object}
+
+\item{level}{The confidence level. Must be the default of 0.95 as this is what
+is available in the saemix object}
+
+\item{backtransform}{In case the model was fitted with mkin transformations,
+should we backtransform the parameters where a one to one correlation
+between transformed and backtransformed parameters exists?}
+}
+\value{
+An object with 'intervals.saem.mmkin' and 'intervals.lme' in the
+class attribute
+}
+\description{
+Confidence intervals for parameters in saem.mmkin objects
+}
diff --git a/man/nlmixr.mmkin.Rd b/man/nlmixr.mmkin.Rd
index 0f4f41a2..173b0d39 100644
--- a/man/nlmixr.mmkin.Rd
+++ b/man/nlmixr.mmkin.Rd
@@ -50,8 +50,8 @@ nlmixr_data(object, ...)
 
 \item{table}{Passed to \link[nlmixr:nlmixr]{nlmixr::nlmixr}}
 
-\item{error_model}{Possibility to override the error model which is being
-set based on the error model used in the mmkin row object.}
+\item{error_model}{Optional argument to override the error model which is
+being set based on the error model used in the mmkin row object.}
 
 \item{test_log_parms}{If TRUE, an attempt is made to use more robust starting
 values for population parameters fitted as log parameters in mkin (like
diff --git a/man/reexports.Rd b/man/reexports.Rd
index d4fc6b96..dfbb76a7 100644
--- a/man/reexports.Rd
+++ b/man/reexports.Rd
@@ -1,8 +1,10 @@
 % Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/lrtest.mkinfit.R, R/nlme.mmkin.R, R/nlmixr.R
+% Please edit documentation in R/intervals.R, R/lrtest.mkinfit.R,
+%   R/nlme.mmkin.R, R/nlmixr.R
 \docType{import}
 \name{reexports}
 \alias{reexports}
+\alias{intervals}
 \alias{lrtest}
 \alias{nlme}
 \alias{nlmixr}
@@ -15,7 +17,7 @@ below to see their documentation.
 \describe{
   \item{lmtest}{\code{\link[lmtest]{lrtest}}}
 
-  \item{nlme}{\code{\link[nlme]{nlme}}}
+  \item{nlme}{\code{\link[nlme]{intervals}}, \code{\link[nlme]{nlme}}}
 
   \item{nlmixr}{\code{\link[nlmixr]{nlmixr}}}
 }}