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| author | Johannes Ranke <jranke@uni-bremen.de> | 2020-04-15 20:42:29 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2020-04-15 20:42:29 +0200 |
| commit | d518c4cfa22994db5ba81a6b01c6cb4c4186872e (patch) | |
| tree | cc5cfb591981d46f084ad4c0d21e548b5b4c1be6 /man | |
| parent | 42171ba55222383a0d47e5aacd46a972819e7812 (diff) | |
Adapt endpoint() to also work for nlme.mmkin objects
Diffstat (limited to 'man')
| -rw-r--r-- | man/endpoints.Rd | 12 | ||||
| -rw-r--r-- | man/nlme.mmkin.Rd | 5 |
2 files changed, 15 insertions, 2 deletions
diff --git a/man/endpoints.Rd b/man/endpoints.Rd index be180737..26b5ee08 100644 --- a/man/endpoints.Rd +++ b/man/endpoints.Rd @@ -8,10 +8,14 @@ with mkinfit} endpoints(fit) } \arguments{ -\item{fit}{An object of class \code{\link{mkinfit}}.} +\item{fit}{An object of class \code{\link{mkinfit}} or +\code{\link{nlme.mmkin}}} } \value{ -A list with the components mentioned above. +A list with a matrix of dissipation times named distimes, + and, if applicable, a vector of formation fractions named ff + and, if the SFORB model was in use, a vector of eigenvalues + of these SFORB models, equivalent to DFOP rate constants } \description{ This function calculates DT50 and DT90 values as well as formation fractions @@ -27,6 +31,10 @@ The function is used internally by \code{\link{summary.mkinfit}}. fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE) endpoints(fit) + \dontrun{ + fit_2 <- mkinfit("SFORB", FOCUS_2006_C, quiet = TRUE) + endpoints(fit_2) + } } \author{ diff --git a/man/nlme.mmkin.Rd b/man/nlme.mmkin.Rd index 26dcce66..97d444e4 100644 --- a/man/nlme.mmkin.Rd +++ b/man/nlme.mmkin.Rd @@ -79,8 +79,10 @@ ds <- lapply(experimental_data_for_UBA_2019[6:10], function(x) subset(x$data[c("name", "time", "value")], name == "parent")) f <- mmkin("SFO", ds, quiet = TRUE, cores = 1) library(nlme) +endpoints(f[[1]]) f_nlme <- nlme(f) print(f_nlme) +endpoints(f_nlme) f_nlme_2 <- nlme(f, start = c(parent_0 = 100, log_k_parent_sink = 0.1)) update(f_nlme_2, random = parent_0 ~ 1) \dontrun{ @@ -125,6 +127,9 @@ update(f_nlme_2, random = parent_0 ~ 1) anova(f_nlme_dfop_sfo, f_nlme_fomc_sfo, f_nlme_sfo_sfo) anova(f_nlme_dfop_sfo, f_nlme_sfo_sfo) # if we ignore FOMC + + endpoints(f_nlme_sfo_sfo) + endpoints(f_nlme_dfop_sfo) } } \seealso{ |