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authorJohannes Ranke <jranke@uni-bremen.de>2020-05-08 15:22:54 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2020-05-08 15:22:54 +0200
commit636dade692b8eee012004a2740616385333efc48 (patch)
tree4b5d54da6f0ac77526b39ad092dfdaa7f64362bc /test.log
parent2c313bdb12c5fcae8272600021fcedbc99425130 (diff)
Avoid duplicate merge in tc error model fit
This increases the performance in the complete test suite by about 20 secs from 120 to around 100 secs. I tried improving merge speed by using data.table on another branch, but this did not give a noticeable performance gain.
Diffstat (limited to 'test.log')
-rw-r--r--test.log22
1 files changed, 11 insertions, 11 deletions
diff --git a/test.log b/test.log
index db558407..4f8bb36b 100644
--- a/test.log
+++ b/test.log
@@ -2,32 +2,32 @@ Loading mkin
Testing mkin
✔ | OK F W S | Context
✔ | 2 | Export dataset for reading into CAKE
-✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.2 s]
+✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.1 s]
✔ | 4 | Calculation of FOCUS chi2 error levels [1.9 s]
-✔ | 7 | Fitting the SFORB model [9.9 s]
+✔ | 7 | Fitting the SFORB model [9.8 s]
✔ | 5 | Calculation of Akaike weights
-✔ | 10 | Confidence intervals and p-values [8.5 s]
-✔ | 14 | Error model fitting [34.0 s]
+✔ | 10 | Confidence intervals and p-values [8.4 s]
+✔ | 14 | Error model fitting [22.0 s]
✔ | 6 | Test fitting the decline of metabolites from their maximum [0.7 s]
✔ | 1 | Fitting the logistic model [0.8 s]
✔ | 1 | Test dataset class mkinds used in gmkin
✔ | 12 | Special cases of mkinfit calls [2.1 s]
✔ | 8 | mkinmod model generation and printing [0.2 s]
✔ | 3 | Model predictions with mkinpredict [0.4 s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [3.9 s]
-✔ | 9 | Nonlinear mixed-effects models [11.8 s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [3.8 s]
+✔ | 9 | Nonlinear mixed-effects models [11.9 s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s]
✔ | 3 | Summary
-✔ | 14 | Plotting [4.5 s]
+✔ | 14 | Plotting [4.1 s]
✔ | 4 | AIC calculation
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [4.0 s]
+✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [3.9 s]
✔ | 1 | Summaries of old mkinfit objects
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [6.0 s]
-✔ | 9 | Hypothesis tests [29.9 s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [6.1 s]
+✔ | 9 | Hypothesis tests [21.6 s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 124.5 s
+Duration: 103.4 s
OK: 156
Failed: 0

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