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| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-03-03 13:16:06 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-03-03 13:16:06 +0100 |
| commit | 9dd9c6362575bc786cf0db7c0c7ea9176047a1dc (patch) | |
| tree | 3461d3f8d443eb98daf76ffa42d16d72b6e1636d /test.log | |
| parent | e94046786672eec082a287dc784052ee2d760d58 (diff) | |
R-devel with openblas
Diffstat (limited to 'test.log')
| -rw-r--r-- | test.log | 26 |
1 files changed, 13 insertions, 13 deletions
@@ -3,24 +3,24 @@ Loading required package: parallel ℹ Testing mkin ✔ | F W S OK | Context ✔ | 5 | AIC calculation -✔ | 5 | Analytical solutions for coupled models [4.3s] +✔ | 5 | Analytical solutions for coupled models [4.2s] ✔ | 5 | Calculation of Akaike weights ✔ | 2 | Export dataset for reading into CAKE ✔ | 12 | Confidence intervals and p-values [1.0s] ⠋ | 1 | Dimethenamid data from 2018 -✔ | 1 27 | Dimethenamid data from 2018 [62.6s] +✔ | 1 27 | Dimethenamid data from 2018 [63.8s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_dmta.R:164:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data Reason: Fitting this ODE model with saemix takes about 15 minutes on my system ──────────────────────────────────────────────────────────────────────────────── -✔ | 14 | Error model fitting [6.9s] +✔ | 14 | Error model fitting [7.0s] ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels [0.8s] ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.1s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.5s] ✔ | 1 | Fitting the logistic model [0.3s] -⠴ | 6 | Nonlinear mixed-effects models -✔ | 1 14 | Nonlinear mixed-effects models [1.3s] +⠇ | 9 | Nonlinear mixed-effects models +✔ | 1 14 | Nonlinear mixed-effects models [1.6s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits Reason: Fitting with saemix takes around 10 minutes when using deSolve @@ -30,22 +30,22 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve ✔ | 3 | mkinfit features [1.1s] ✔ | 8 | mkinmod model generation and printing [0.2s] ✔ | 3 | Model predictions with mkinpredict [0.3s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.1s] -✔ | 9 | Nonlinear mixed-effects models with nlme [9.4s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.0s] +✔ | 9 | Nonlinear mixed-effects models with nlme [9.1s] ✔ | 16 | Plotting [1.5s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 23 | saemix parent models [29.4s] -✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.7s] -✔ | 7 | Fitting the SFORB model [4.4s] +✔ | 23 | saemix parent models [29.3s] +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.6s] +✔ | 7 | Fitting the SFORB model [4.6s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 4 | Summary [0.1s] -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.6s] -✔ | 9 | Hypothesis tests [9.4s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.5s] +✔ | 9 | Hypothesis tests [9.3s] ✔ | 2 | tffm0 ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 144.3 s +Duration: 145.2 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 15 minutes on my system (1) |