Add some tests for the nlme convenience functions

1 files changed, 19 insertions, 9 deletions

diff --git a/test.log b/test.log
index 84b13a10..877d5193 100644
--- a/test.log
+++ b/test.log
@@ -6,15 +6,25 @@ Testing mkin
 ✔ |   4       | Calculation of FOCUS chi2 error levels [2.2 s]
 ✔ |   4       | Fitting the SFORB model [1.7 s]
 ✔ |   5       | Calculation of Akaike weights
-✔ |  10       | Confidence intervals and p-values [9.6 s]
-✔ |  14       | Error model fitting [38.4 s]
-✔ |   6       | Test fitting the decline of metabolites from their maximum [0.7 s]
+✔ |  10       | Confidence intervals and p-values [9.4 s]
+✔ |  14       | Error model fitting [37.5 s]
+✔ |   6       | Test fitting the decline of metabolites from their maximum [0.8 s]
 ✔ |   1       | Fitting the logistic model [0.9 s]
 ✔ |   1       | Test dataset class mkinds used in gmkin
-✔ |  12       | Special cases of mkinfit calls [2.2 s]
+✔ |  12       | Special cases of mkinfit calls [2.3 s]
 ✔ |   9       | mkinmod model generation and printing [0.2 s]
 ✔ |   3       | Model predictions with mkinpredict [0.3 s]
-✔ |  16       | Evaluations according to 2015 NAFTA guidance [4.2 s]
+✔ |  16       | Evaluations according to 2015 NAFTA guidance [4.1 s]
+✖ |   0 1     | Nonlinear mixed-effects models [1.3 s]
+────────────────────────────────────────────────────────────────────────────────
+test_nlme.R:37: error: nlme_function works correctly
+konnte Funktion "nlme_f" nicht finden
+Backtrace:
+ 1. nlme::nlme(...) tests/testthat/test_nlme.R:37:2
+ 2. nlme::nlme.formula(...)
+ 3. [ base::eval(...) ] with 1 more call
+ 5. [ base::eval(...) ] with 1 more call
+────────────────────────────────────────────────────────────────────────────────
 ✔ |   4       | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s]
 ✔ |   3       | Summary
 ✔ |  11       | Plotting [0.6 s]
@@ -22,17 +32,17 @@ Testing mkin
 ✔ |   2       | Residuals extracted from mkinfit models
 ✔ |   2       | Complex test case from Schaefer et al. (2007) Piacenza paper [5.3 s]
 ✔ |   1       | Summaries of old mkinfit objects
-✔ |   4       | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.1 s]
-✔ |   7     1 | Hypothesis tests [32.5 s]
+✔ |   4       | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.0 s]
+✔ |   7     1 | Hypothesis tests [31.9 s]
 ────────────────────────────────────────────────────────────────────────────────
 test_tests.R:60: skip: We can do a likelihood ratio test using an update specification
 Reason: This errors out if called by testthat while it works in a normal R session
 ────────────────────────────────────────────────────────────────────────────────
 
 ══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 112.1 s
+Duration: 111.4 s
 
 OK:       138
-Failed:   0
+Failed:   1
 Warnings: 0
 Skipped:  1