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authorJohannes Ranke <jranke@uni-bremen.de>2020-12-09 09:44:14 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2020-12-09 09:44:14 +0100
commitf33ce936323d9afc884f9254fb57d19744cadf75 (patch)
treed19d0d3ac4bbbacea712550a82d9764fadd89477 /test.log
parentc51fe964d66303f531d6b593b6fe46bdfacb13b4 (diff)
Fix tests and rerun
Diffstat (limited to 'test.log')
-rw-r--r--test.log38
1 files changed, 10 insertions, 28 deletions
diff --git a/test.log b/test.log
index 70011abb..49a1a704 100644
--- a/test.log
+++ b/test.log
@@ -3,14 +3,15 @@ Loading required package: parallel
Testing mkin
✔ | OK F W S | Context
✔ | 5 | AIC calculation
-✔ | 2 | Export dataset for reading into CAKE
+✔ | 2 | Export dataset for reading into CAKE [0.2 s]
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.0 s]
✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s]
✔ | 7 | Fitting the SFORB model [3.5 s]
✔ | 5 | Analytical solutions for coupled models [3.2 s]
✔ | 5 | Calculation of Akaike weights
✔ | 14 | Confidence intervals and p-values [1.2 s]
-✔ | 14 | Error model fitting [4.5 s]
+✔ | 14 | Error model fitting [4.6 s]
+✔ | 1 | Time step normalisation
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s]
✔ | 1 | Fitting the logistic model [0.2 s]
✔ | 1 | Test dataset class mkinds used in gmkin
@@ -18,38 +19,19 @@ Testing mkin
✔ | 12 | Special cases of mkinfit calls [0.7 s]
✔ | 8 | mkinmod model generation and printing [0.2 s]
✔ | 3 | Model predictions with mkinpredict [0.4 s]
-✔ | 14 2 | Evaluations according to 2015 NAFTA guidance [1.3 s]
-────────────────────────────────────────────────────────────────────────────────
-Skip (test_nafta.R:25:5): Test data from Appendix B are correctly evaluated
-Reason: getRversion() < "4.1.0" is TRUE
-
-Skip (test_nafta.R:53:5): Test data from Appendix D are correctly evaluated
-Reason: getRversion() < "4.1.0" is TRUE
-────────────────────────────────────────────────────────────────────────────────
-✔ | 9 | Nonlinear mixed-effects models [7.9 s]
-✔ | 0 1 | Plotting [0.7 s]
-────────────────────────────────────────────────────────────────────────────────
-Skip (test_plot.R:28:3): Plotting mkinfit and mmkin objects is reproducible
-Reason: getRversion() < "4.1.0" is TRUE
-────────────────────────────────────────────────────────────────────────────────
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.6 s]
+✔ | 9 | Nonlinear mixed-effects models [7.7 s]
+✔ | 18 | Plotting [2.1 s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 13 1 | Nonlinear mixed effects models fitted with SAEM from saemix [19.0 s]
-────────────────────────────────────────────────────────────────────────────────
-Skip (test_saem.R:103:1): Simple models with metabolite can be fitted with saemix
-Reason: empty test
-────────────────────────────────────────────────────────────────────────────────
+✔ | 17 | Nonlinear mixed effects models fitted with SAEM from saemix [19.1 s]
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s]
✔ | 4 | Summary [0.1 s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3 s]
-✔ | 9 | Hypothesis tests [7.3 s]
+✔ | 9 | Hypothesis tests [7.4 s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 59.7 s
-
-── Skipped tests ──────────────────────────────────────────────────────────────
-● empty test (1)
-● getRversion() < "4.1.0" is TRUE (3)
+Duration: 62.0 s
-[ FAIL 0 | WARN 0 | SKIP 4 | PASS 164 ]
+[ FAIL 0 | WARN 0 | SKIP 0 | PASS 189 ]

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