diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2019-10-28 13:23:40 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2019-10-28 13:23:40 +0100 |
| commit | bd761d879a95872f82e6d8f893634a61e122a938 (patch) | |
| tree | 0b66fa5064eb5bd9e0014de18f433c2692fcbc00 /test.log | |
| parent | 6e5630a0df7e857697ff2ce4730a5f7f45b67377 (diff) | |
Fix the cutoff for likelihood based intervals
The cutoff now matches what is given by Venzon and Moolgavkar (1988).
Also, confidence intervals closely match intervals obtained with
stats4::confint in the test case where an stats4::mle object
is created from the likelihood function in one test case.
Static documentation rebuilt by pkgdown
Diffstat (limited to 'test.log')
| -rw-r--r-- | test.log | 16 |
1 files changed, 8 insertions, 8 deletions
@@ -2,10 +2,10 @@ Loading mkin Testing mkin ✔ | OK F W S | Context ✔ | 2 | Export dataset for reading into CAKE -✔ | 9 | Confidence intervals and p-values [2.3 s] -✔ | 10 | Error model fitting [37.2 s] +✔ | 10 | Confidence intervals and p-values [12.8 s] +✔ | 10 | Error model fitting [37.1 s] ✔ | 5 | Calculation of FOCUS chi2 error levels [3.5 s] -✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.3 s] +✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.4 s] ✔ | 6 | Test fitting the decline of metabolites from their maximum [0.9 s] ✔ | 1 | Fitting the logistic model [0.9 s] ✔ | 1 | Test dataset class mkinds used in gmkin @@ -13,19 +13,19 @@ Testing mkin ✔ | 9 | mkinmod model generation and printing [0.2 s] ✔ | 3 | Model predictions with mkinpredict [0.3 s] ✔ | 16 | Evaluations according to 2015 NAFTA guidance [4.0 s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.3 s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s] ✔ | 3 | Summary ✔ | 11 | Plotting [0.6 s] ✔ | 3 | AIC calculation -✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [5.2 s] +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [5.3 s] ✔ | 4 | Fitting the SFORB model [1.7 s] ✔ | 1 | Summaries of old mkinfit objects -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.0 s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.2 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 72.1 s +Duration: 84.5 s -OK: 119 +OK: 120 Failed: 0 Warnings: 0 Skipped: 0 |