aboutsummaryrefslogtreecommitdiff
path: root/test.log
diff options
context:
space:
mode:
authorJohannes Ranke <jranke@uni-bremen.de>2022-02-10 09:14:59 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-02-10 09:14:59 +0100
commit2b06ba5be233f5b88a3a64f7de916ed476326067 (patch)
tree721d08d9c9d1a6cd6285a904b9981466ad9de72e /test.log
parentd8f31d1323998f33d07535f55c81be380d93ca45 (diff)
GNUMakefile: Convince testthat to give dynamic output
This means that we still get the \r in the test logs so so the postprocessing with sed works unmodified
Diffstat (limited to 'test.log')
-rw-r--r--test.log163
1 files changed, 7 insertions, 156 deletions
diff --git a/test.log b/test.log
index 019305bf..e6ab6d6d 100644
--- a/test.log
+++ b/test.log
@@ -2,190 +2,41 @@
Loading required package: parallel
ℹ Testing mkin
✔ | F W S OK | Context
-
-⠏ | 0 | AIC
-⠏ | 0 | AIC calculation
✔ | 5 | AIC calculation
-
-⠏ | 0 | analytical
-⠏ | 0 | Analytical solutions for coupled models
-⠋ | 1 | Analytical solutions for coupled models
-⠙ | 2 | Analytical solutions for coupled models
-⠹ | 3 | Analytical solutions for coupled models
-⠸ | 4 | Analytical solutions for coupled models
-⠼ | 5 | Analytical solutions for coupled models
-✔ | 5 | Analytical solutions for coupled models [3.4s]
-
-⠏ | 0 | aw
-⠏ | 0 | Calculation of Akaike weights
+✔ | 5 | Analytical solutions for coupled models [3.5s]
✔ | 5 | Calculation of Akaike weights
-
-⠏ | 0 | CAKE_export
-⠏ | 0 | Export dataset for reading into CAKE
✔ | 2 | Export dataset for reading into CAKE
-
-⠏ | 0 | confidence
-⠏ | 0 | Confidence intervals and p-values
-⠼ | 5 | Confidence intervals and p-values
-⠋ | 11 | Confidence intervals and p-values
-⠙ | 12 | Confidence intervals and p-values
✔ | 12 | Confidence intervals and p-values [1.0s]
-
-⠏ | 0 | error_models
-⠏ | 0 | Error model fitting
-⠹ | 3 | Error model fitting
-⠸ | 4 | Error model fitting
-⠼ | 5 | Error model fitting
-⠴ | 6 | Error model fitting
-⠧ | 8 | Error model fitting
-⠏ | 10 | Error model fitting
-⠙ | 12 | Error model fitting
-⠸ | 14 | Error model fitting
-✔ | 14 | Error model fitting [4.9s]
-
-⠏ | 0 | f_time_norm
-⠏ | 0 | Time step normalisation
+✔ | 14 | Error model fitting [4.8s]
✔ | 5 | Time step normalisation
-
-⠏ | 0 | FOCUS_chi2_error_level
-⠏ | 0 | Calculation of FOCUS chi2 error levels
-⠙ | 2 | Calculation of FOCUS chi2 error levels
-⠸ | 4 | Calculation of FOCUS chi2 error levels
✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
-
-⠏ | 0 | FOCUS_D_UBA_expertise
-⠏ | 0 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
-⠋ | 1 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
-⠧ | 8 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
-⠏ | 10 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
-
-⠏ | 0 | from_max_mean
-⠏ | 0 | Test fitting the decline of metabolites from their maximum
-⠹ | 3 | Test fitting the decline of metabolites from their maximum
-⠸ | 4 | Test fitting the decline of metabolites from their maximum
-✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
-
-⠏ | 0 | logistic
-⠏ | 0 | Fitting the logistic model
-⠋ | 1 | Fitting the logistic model
+✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s]
✔ | 1 | Fitting the logistic model [0.2s]
-
-⠏ | 0 | mixed
-⠏ | 0 | Nonlinear mixed-effects models
-⠙ | 2 | Nonlinear mixed-effects models
-⠹ | 3 | Nonlinear mixed-effects models
-⠸ | 4 | Nonlinear mixed-effects models
-⠏ | 10 | Nonlinear mixed-effects models
-⠙ | 12 | Nonlinear mixed-effects models
-⠧ | 18 | Nonlinear mixed-effects models
-⠙ | 22 | Nonlinear mixed-effects models
-⠹ | 23 | Nonlinear mixed-effects models
-✔ | 1 35 | Nonlinear mixed-effects models [26.6s]
+✔ | 1 35 | Nonlinear mixed-effects models [26.8s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:161:3): saem results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
────────────────────────────────────────────────────────────────────────────────
-
-⠏ | 0 | mkinds
-⠏ | 0 | Test dataset classes mkinds and mkindsg
✔ | 2 | Test dataset classes mkinds and mkindsg
-
-⠏ | 0 | mkinfit_errors
-⠏ | 0 | Special cases of mkinfit calls
-⠇ | 9 | Special cases of mkinfit calls
-⠏ | 10 | Special cases of mkinfit calls
✔ | 10 | Special cases of mkinfit calls [0.4s]
-
-⠏ | 0 | mkinfit
-⠏ | 0 | mkinfit features
-⠋ | 1 | mkinfit features
✔ | 1 | mkinfit features [0.3s]
-
-⠏ | 0 | mkinmod
-⠏ | 0 | mkinmod model generation and printing
-⠧ | 8 | mkinmod model generation and printing
✔ | 8 | mkinmod model generation and printing [0.2s]
-
-⠏ | 0 | mkinpredict_SFO_SFO
-⠏ | 0 | Model predictions with mkinpredict
-⠋ | 1 | Model predictions with mkinpredict
-✔ | 3 | Model predictions with mkinpredict [0.3s]
-
-⠏ | 0 | nafta
-⠏ | 0 | Evaluations according to 2015 NAFTA guidance
-⠙ | 2 | Evaluations according to 2015 NAFTA guidance
-⠇ | 9 | Evaluations according to 2015 NAFTA guidance
-⠏ | 10 | Evaluations according to 2015 NAFTA guidance
+✔ | 3 | Model predictions with mkinpredict [0.4s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.5s]
-
-⠏ | 0 | nlme
-⠏ | 0 | Nonlinear mixed-effects models with nlme
-⠋ | 1 | Nonlinear mixed-effects models with nlme
-⠙ | 2 | Nonlinear mixed-effects models with nlme
-⠼ | 5 | Nonlinear mixed-effects models with nlme
-⠴ | 6 | Nonlinear mixed-effects models with nlme
-⠧ | 8 | Nonlinear mixed-effects models with nlme
-⠇ | 9 | Nonlinear mixed-effects models with nlme
✔ | 9 | Nonlinear mixed-effects models with nlme [8.3s]
-
-⠏ | 0 | nlmixr
-⠏ | 0 | plot
-⠏ | 0 | Plotting
-⠋ | 1 | Plotting
-⠇ | 9 | Plotting
-⠹ | 13 | Plotting
-⠼ | 15 | Plotting
✔ | 16 | Plotting [1.3s]
-
-⠏ | 0 | residuals
-⠏ | 0 | Residuals extracted from mkinfit models
✔ | 4 | Residuals extracted from mkinfit models
-
-⠏ | 0 | schaefer07_complex_case
-⠏ | 0 | Complex test case from Schaefer et al. (2007) Piacenza paper
-⠋ | 1 | Complex test case from Schaefer et al. (2007) Piacenza paper
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s]
-
-⠏ | 0 | SFORB
-⠏ | 0 | Fitting the SFORB model
-⠋ | 1 | Fitting the SFORB model
-⠼ | 5 | Fitting the SFORB model
✔ | 7 | Fitting the SFORB model [3.9s]
-
-⠏ | 0 | summary_old_objects
-⠏ | 0 | Summaries of old mkinfit objects
✔ | 1 | Summaries of old mkinfit objects
-
-⠏ | 0 | summary
-⠏ | 0 | Summary
-⠸ | 4 | Summary
✔ | 4 | Summary [0.1s]
-
-⠏ | 0 | synthetic_data_for_UBA_2014
-⠏ | 0 | Results for synthetic data established in expertise for UBA (Ranke 2014)
-⠋ | 1 | Results for synthetic data established in expertise for UBA (Ranke 2014)
-⠹ | 3 | Results for synthetic data established in expertise for UBA (Ranke 2014)
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3s]
-
-⠏ | 0 | tests
-⠏ | 0 | Hypothesis tests
-⠼ | 5 | Hypothesis tests
-⠴ | 6 | Hypothesis tests
-⠧ | 8 | Hypothesis tests
-⠇ | 9 | Hypothesis tests
-✔ | 9 | Hypothesis tests [8.5s]
-
-⠏ | 0 | twa
-⠏ | 0 | Calculation of maximum time weighted average concentrations (TWAs)
-⠋ | 1 | Calculation of maximum time weighted average concentrations (TWAs)
-⠙ | 2 | Calculation of maximum time weighted average concentrations (TWAs)
-⠹ | 3 | Calculation of maximum time weighted average concentrations (TWAs)
-⠸ | 4 | Calculation of maximum time weighted average concentrations (TWAs)
+✔ | 9 | Hypothesis tests [8.6s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 69.0 s
+Duration: 69.5 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting with saemix takes around 10 minutes when using deSolve (1)

Contact - Imprint