Add a test for saemix with deSolve

But skip the test as it takes too long to always run

1 files changed, 16 insertions, 9 deletions

diff --git a/test.log b/test.log
index 13fa7e70..186ec590 100644
--- a/test.log
+++ b/test.log
@@ -6,7 +6,7 @@ Testing mkin
 ✔ |   2       | Export dataset for reading into CAKE
 ✔ |  14       | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.0 s]
 ✔ |   4       | Calculation of FOCUS chi2 error levels [0.5 s]
-✔ |   7       | Fitting the SFORB model [3.7 s]
+✔ |   7       | Fitting the SFORB model [3.6 s]
 ✔ |   5       | Analytical solutions for coupled models [3.3 s]
 ✔ |   5       | Calculation of Akaike weights
 ✔ |  14       | Confidence intervals and p-values [1.2 s]
@@ -14,24 +14,31 @@ Testing mkin
 ✔ |   3       | Time step normalisation
 ✔ |   4       | Test fitting the decline of metabolites from their maximum [0.3 s]
 ✔ |   1       | Fitting the logistic model [0.2 s]
-✔ |  31       | Nonlinear mixed effects models [27.4 s]
+✔ |  33     1 | Nonlinear mixed effects models [27.8 s]
+────────────────────────────────────────────────────────────────────────────────
+Skip (test_mixed.R:137:3): saem results are reproducible for biphasic fits
+Reason: Fitting with saemix takes around 10 minutes when using deSolve
+────────────────────────────────────────────────────────────────────────────────
 ✔ |   2       | Test dataset classes mkinds and mkindsg
 ✔ |   1       | mkinfit features [0.3 s]
 ✔ |  12       | Special cases of mkinfit calls [0.8 s]
-✔ |   8       | mkinmod model generation and printing [0.2 s]
+✔ |   8       | mkinmod model generation and printing [0.3 s]
 ✔ |   3       | Model predictions with mkinpredict [0.4 s]
-✔ |  16       | Evaluations according to 2015 NAFTA guidance [1.6 s]
+✔ |  16       | Evaluations according to 2015 NAFTA guidance [1.7 s]
 ✔ |   9       | Nonlinear mixed-effects models [7.9 s]
 ✔ |  16       | Plotting [1.9 s]
 ✔ |   4       | Residuals extracted from mkinfit models
-✔ |   2       | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s]
+✔ |   2       | Complex test case from Schaefer et al. (2007) Piacenza paper [1.6 s]
 ✔ |   4       | Summary [0.1 s]
 ✔ |   1       | Summaries of old mkinfit objects
 ✔ |   4       | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3 s]
-✔ |   9       | Hypothesis tests [7.5 s]
-✔ |   4       | Calculation of maximum time weighted average concentrations (TWAs) [2.3 s]
+✔ |   9       | Hypothesis tests [7.3 s]
+✔ |   4       | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s]
 
 ══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 69.5 s
+Duration: 69.7 s
 
-[ FAIL 0 | WARN 0 | SKIP 0 | PASS 204 ]
+── Skipped tests  ──────────────────────────────────────────────────────────────
+● Fitting with saemix takes around 10 minutes when using deSolve (1)
+
+[ FAIL 0 | WARN 0 | SKIP 1 | PASS 206 ]