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authorJohannes Ranke <jranke@uni-bremen.de>2019-11-09 01:05:51 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2019-11-09 01:05:51 +0100
commit20b9c584e7c43ecbb708459e531c24a1a4751e17 (patch)
treea0dd523fc6cb60e33420b0eb9bf79307e5b2a2a4 /test.log
parentead1f286271923f57d83aed41cb34181a10773ef (diff)
Add a lack-of-fit test
- Switch an example dataset in the test setup to a dataset with replicates, adapt tests - Skip the test for lrtest with an update specification as it does not only fail when pkgdown generates static help pages, but also in testthat
Diffstat (limited to 'test.log')
-rw-r--r--test.log26
1 files changed, 15 insertions, 11 deletions
diff --git a/test.log b/test.log
index 806c72b3..bc6d26ae 100644
--- a/test.log
+++ b/test.log
@@ -2,32 +2,36 @@ Loading mkin
Testing mkin
✔ | OK F W S | Context
✔ | 2 | Export dataset for reading into CAKE
-✔ | 10 | Confidence intervals and p-values [9.7 s]
-✔ | 14 | Error model fitting [36.5 s]
+✔ | 10 | Confidence intervals and p-values [10.1 s]
+✔ | 14 | Error model fitting [40.5 s]
✔ | 4 | Calculation of FOCUS chi2 error levels [2.2 s]
-✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.3 s]
+✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.4 s]
✔ | 6 | Test fitting the decline of metabolites from their maximum [0.7 s]
✔ | 1 | Fitting the logistic model [0.9 s]
✔ | 1 | Test dataset class mkinds used in gmkin
✔ | 12 | Special cases of mkinfit calls [2.4 s]
✔ | 9 | mkinmod model generation and printing [0.2 s]
✔ | 3 | Model predictions with mkinpredict [0.3 s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [4.0 s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [4.1 s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.3 s]
✔ | 3 | Summary
✔ | 11 | Plotting [0.6 s]
✔ | 4 | AIC calculation
✔ | 2 | Residuals extracted from mkinfit models
-✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [5.3 s]
-✔ | 4 | Fitting the SFORB model [1.7 s]
+✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [5.6 s]
+✔ | 4 | Fitting the SFORB model [1.8 s]
✔ | 1 | Summaries of old mkinfit objects
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.1 s]
-✔ | 6 | Hypothesis tests [31.2 s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [7.5 s]
+✔ | 7 1 | Hypothesis tests [34.1 s]
+────────────────────────────────────────────────────────────────────────────────
+test_tests.R:59: skip: We can do a likelihood ratio test using an update specification
+Reason: This errors out if called by testthat while it works in a normal R session
+────────────────────────────────────────────────────────────────────────────────
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 108.3 s
+Duration: 116.9 s
-OK: 132
+OK: 133
Failed: 0
Warnings: 0
-Skipped: 0
+Skipped: 1

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