Version 1.0.4 published yesterdayv1.0.4

1 files changed, 25 insertions, 18 deletions

diff --git a/test.log b/test.log
index b49088e5..a8b42364 100644
--- a/test.log
+++ b/test.log
@@ -1,27 +1,33 @@
-Loading mkin
+ℹ Loading mkin
 Loading required package: parallel
-Testing mkin
+ℹ Testing mkin
 ✔ |  OK F W S | Context
 ✔ |   5       | AIC calculation
-✔ |   2       | Export dataset for reading into CAKE
-✔ |  14       | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.0 s]
-✔ |   4       | Calculation of FOCUS chi2 error levels [0.5 s]
-✔ |   7       | Fitting the SFORB model [3.5 s]
-✔ |   5       | Analytical solutions for coupled models [3.1 s]
+✔ |   5       | Analytical solutions for coupled models [3.2 s]
 ✔ |   5       | Calculation of Akaike weights
-✔ |  12       | Confidence intervals and p-values [1.0 s]
-✔ |  14       | Error model fitting [4.2 s]
+✔ |   2       | Export dataset for reading into CAKE
+✔ |  12       | Confidence intervals and p-values [1.3 s]
+✔ |  14       | Error model fitting [4.3 s]
 ✔ |   5       | Time step normalisation
+✔ |   4       | Calculation of FOCUS chi2 error levels [0.5 s]
+✔ |  14       | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.7 s]
 ✔ |   4       | Test fitting the decline of metabolites from their maximum [0.3 s]
 ✔ |   1       | Fitting the logistic model [0.2 s]
 ✔ |   5       | Nonlinear mixed-effects models [0.1 s]
 ✔ |   2       | Test dataset classes mkinds and mkindsg
-✔ |   1       | mkinfit features [0.3 s]
 ✔ |  10       | Special cases of mkinfit calls [0.3 s]
+✔ |   1       | mkinfit features [0.3 s]
 ✔ |   8       | mkinmod model generation and printing [0.2 s]
-✔ |   3       | Model predictions with mkinpredict [0.4 s]
-✔ |  16       | Evaluations according to 2015 NAFTA guidance [1.6 s]
-✔ |   9       | Nonlinear mixed-effects models [7.9 s]
+✔ |   3       | Model predictions with mkinpredict [0.3 s]
+✔ |  16       | Evaluations according to 2015 NAFTA guidance [1.7 s]
+✖ |   7 1     | Nonlinear mixed-effects models [1.9 s]
+────────────────────────────────────────────────────────────────────────────────
+Error (test_nlme.R:116:3): nlme_function works correctly in other cases
+Error: unused argument ("sysname")
+Backtrace:
+ 1. mkin::mmkin("SFO", ds_me_sfo_5, quiet = TRUE) test_nlme.R:116:2
+ 2. parallel::mclapply(...) /home/jranke/git/mkin/R/mmkin.R:118:4
+────────────────────────────────────────────────────────────────────────────────
 ✖ |  10 4     | Plotting [1.7 s]
 ────────────────────────────────────────────────────────────────────────────────
 Failure (test_plot.R:20:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
@@ -42,13 +48,14 @@ Figures don't match: plot-res-for-focus-d.svg
 ────────────────────────────────────────────────────────────────────────────────
 ✔ |   4       | Residuals extracted from mkinfit models
 ✔ |   2       | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s]
-✔ |   4       | Summary [0.1 s]
+✔ |   7       | Fitting the SFORB model [3.6 s]
 ✔ |   1       | Summaries of old mkinfit objects
+✔ |   4       | Summary [0.1 s]
 ✔ |   4       | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s]
-✔ |   9       | Hypothesis tests [8.3 s]
-✔ |   4       | Calculation of maximum time weighted average concentrations (TWAs) [2.5 s]
+✔ |   9       | Hypothesis tests [8.1 s]
+✔ |   4       | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s]
 
 ══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 41.0 s
+Duration: 35.2 s
 
-[ FAIL 4 | WARN 0 | SKIP 0 | PASS 170 ]
+[ FAIL 5 | WARN 0 | SKIP 0 | PASS 168 ]