Use all cores per default, confint tolerance

Also, use more intelligent starting values for the variance of the
random effects for saemix. While this does not appear to speed up
the convergence, it shows where this variance is greatly reduced
by using mixed-effects models as opposed to the separate independent
fits.

1 files changed, 10 insertions, 10 deletions

diff --git a/test.log b/test.log
index ffd374e4..3dcf271d 100644
--- a/test.log
+++ b/test.log
@@ -4,31 +4,31 @@ Testing mkin
 ✔ |   2       | Export dataset for reading into CAKE
 ✔ |  13       | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.1 s]
 ✔ |   4       | Calculation of FOCUS chi2 error levels [0.4 s]
-✔ |   7       | Fitting the SFORB model [3.2 s]
-✔ |   5       | Analytical solutions for coupled models [3.0 s]
+✔ |   7       | Fitting the SFORB model [3.3 s]
+✔ |   5       | Analytical solutions for coupled models [3.1 s]
 ✔ |   5       | Calculation of Akaike weights
 ✔ |  10       | Confidence intervals and p-values [1.0 s]
-✔ |  14       | Error model fitting [3.7 s]
-✔ |   4       | Test fitting the decline of metabolites from their maximum [0.2 s]
+✔ |  14       | Error model fitting [3.9 s]
+✔ |   4       | Test fitting the decline of metabolites from their maximum [0.3 s]
 ✔ |   1       | Fitting the logistic model [0.2 s]
 ✔ |   1       | Test dataset class mkinds used in gmkin
 ✔ |  12       | Special cases of mkinfit calls [0.6 s]
 ✔ |   8       | mkinmod model generation and printing [0.2 s]
-✔ |   3       | Model predictions with mkinpredict [0.3 s]
-✔ |  16       | Evaluations according to 2015 NAFTA guidance [1.3 s]
-✔ |   9       | Nonlinear mixed-effects models [7.5 s]
+✔ |   3       | Model predictions with mkinpredict [0.4 s]
+✔ |  16       | Evaluations according to 2015 NAFTA guidance [1.5 s]
+✔ |   9       | Nonlinear mixed-effects models [7.7 s]
 ✔ |   4       | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s]
-✔ |   3       | Summary
+✔ |   3       | Summary [0.1 s]
 ✔ |  14       | Plotting [1.4 s]
 ✔ |   4       | AIC calculation
 ✔ |   4       | Residuals extracted from mkinfit models
 ✔ |   2       | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4 s]
 ✔ |   1       | Summaries of old mkinfit objects
 ✔ |   4       | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3 s]
-✔ |   9       | Hypothesis tests [6.6 s]
+✔ |   9       | Hypothesis tests [6.5 s]
 
 ══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 37.2 s
+Duration: 38.2 s
 
 OK:       159
 Failed:   0